SMTL ID : 1x8t.1

EPSPS liganded with the (R)-phosphonate analog of the tetrahedral reaction intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x RC1: [3R-[3A,4A,5B(R*)]]-5-(1-CARBOXY-1-PHOSPHONOETHOXY)-4-HYDROXY-3-(PHOSPHONOOXY)-1-CYCLOHEXENE-1-CARBOXYLIC ACID(Non-covalent)

RC1.1: 17 residues within 4Å: Chain A: K.22, S.23, R.27, T.97, S.169, S.170, Q.171, S.197, Y.200, D.313, N.336, K.340, E.341, R.344, H.385, R.386, K.411 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:T.97, A:Q.171, A:Y.200, A:K.340 Hydrogen bonds: A:K.22, A:S.23, A:S.169, A:S.170, A:Q.171, A:Q.171, A:S.197, A:S.197, A:D.313, A:N.336, A:K.340, A:R.344, A:R.344, A:R.386 Water bridges: A:G.96, A:G.96, A:R.100, A:R.100, A:E.341, A:K.411, A:K.411 Salt bridges: A:K.22, A:R.27, A:K.340, A:K.411

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: K.373, L.374, S.397, D.398 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.374, A:D.398, A:D.398 Water bridges: A:D.398, A:D.398 FMT.3: 4 residues within 4Å: Chain A: R.298, E.300, L.301, F.324 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.298, A:L.301 Water bridges: A:R.298 FMT.4: 3 residues within 4Å: Chain A: A.380, T.381, Y.382 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.381, A:Y.382 Water bridges: A:N.383 FMT.5: 5 residues within 4Å: Chain A: P.8, I.9, A.10, Q.425, A.426 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.10 FMT.6: 5 residues within 4Å: Chain A: T.65, L.66, S.67, R.72, E.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.65, A:R.72, A:E.74 FMT.7: 2 residues within 4Å: Chain A: N.147, Y.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.147, A:Y.148, A:Y.148 FMT.8: 3 residues within 4Å: Chain A: T.286, I.287, C.288 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.281, A:E.281 Water bridges: A:I.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Priestman, M.A. et al., Interaction of phosphonate analogues of the tetrahedral reaction intermediate with 5-enolpyruvylshikimate-3-phosphate synthase in atomic detail. Biochemistry (2005)

Release Date

2005-04-19

Peptides

3-phosphoshikimate 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoshikimate 1-carboxyvinyltransferase

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