SMTL ID : 1hld.1

STRUCTURES OF HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH NAD+ AND SUBSTITUTED BENZYL ALCOHOLS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.46, S.48, H.67, C.174 Ligands: NAD.3, PFB.4, BRB.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.46, A:H.67, A:C.174 ZN.2: 5 residues within 4Å: Chain A: C.97, G.98, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.6: 7 residues within 4Å: Chain B: C.46, S.48, H.67, C.174 Ligands: NAD.8, PFB.9, BRB.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.46, B:H.67, B:C.174 ZN.7: 5 residues within 4Å: Chain B: C.97, G.98, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 31 residues within 4Å: Chain A: C.46, R.47, S.48, H.51, C.174, T.178, G.199, L.200, G.201, G.202, V.203, D.223, I.224, N.225, K.228, V.268, I.269, G.270, R.271, V.292, G.293, V.294, A.317, I.318, F.319, L.362, R.369 Chain B: L.309 Ligands: ZN.1, PFB.4, BRB.5 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:T.178, A:V.203 Hydrogen bonds: A:R.47, A:H.51, A:L.200, A:G.202, A:V.203, A:I.224, A:K.228, A:I.269, A:R.271, A:R.271, A:V.292, A:V.294, A:F.319 Water bridges: A:G.201, A:G.201, A:K.228, A:K.228, A:K.228, A:G.320, A:R.369, A:R.369 Salt bridges: A:R.47, A:K.228, A:R.369 NAD.8: 31 residues within 4Å: Chain B: C.46, R.47, S.48, H.51, C.174, T.178, G.199, L.200, G.201, G.202, V.203, V.222, D.223, I.224, N.225, K.228, V.268, I.269, G.270, R.271, V.292, G.293, V.294, A.317, I.318, F.319, L.362, R.369 Ligands: ZN.6, PFB.9, BRB.10 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:T.178, B:V.203 Hydrogen bonds: B:R.47, B:H.51, B:L.200, B:L.200, B:G.202, B:V.203, B:I.224, B:I.269, B:R.271, B:V.292, B:V.294, B:F.319 Water bridges: B:G.201, B:G.204, B:K.228, B:K.228, B:G.320, B:I.368, B:R.369 Salt bridges: B:R.47, B:R.369

2 x PFB: 2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL(Non-covalent)

PFB.4: 13 residues within 4Å: Chain A: C.46, S.48, L.57, H.67, F.93, L.116, F.140, L.141, C.174, V.294 Ligands: ZN.1, NAD.3, BRB.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.93 Hydrogen bonds: A:S.48 PFB.9: 14 residues within 4Å: Chain B: C.46, S.48, L.57, H.67, F.93, L.116, F.140, L.141, C.174, V.294, I.318 Ligands: ZN.6, NAD.8, BRB.10 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.93 Hydrogen bonds: B:S.48

2 x BRB: PARA-BROMOBENZYL ALCOHOL(Non-covalent)

BRB.5: 12 residues within 4Å: Chain A: C.46, S.48, L.57, H.67, F.93, L.116, C.174, V.294 Chain B: L.309 Ligands: ZN.1, NAD.3, PFB.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.57, A:F.93, A:L.116, A:V.294 Hydrogen bonds: A:S.48, A:H.67 BRB.10: 11 residues within 4Å: Chain B: C.46, S.48, H.67, F.93, L.116, C.174, V.294, I.318 Ligands: ZN.6, NAD.8, PFB.9 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.93, B:L.116, B:V.294, B:I.318 Hydrogen bonds: B:S.48, B:H.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramaswamy, S. et al., Structures of horse liver alcohol dehydrogenase complexed with NAD+ and substituted benzyl alcohols. Biochemistry (1994)

Release Date

1994-10-15

Peptides

ALCOHOL DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALCOHOL DEHYDROGENASE

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