SMTL ID : 5vkr.1

Horse liver alcohol dehydrogenase complexed with adenosine-5-diphosphoribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.46, H.67, E.68, C.174 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.46, A:H.67, A:C.174, H2O.1 ZN.2: 5 residues within 4Å: Chain A: C.97, C.100, C.103, C.111, L.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.4: 4 residues within 4Å: Chain B: C.46, H.67, E.68, C.174 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.46, B:H.67, B:C.174, H2O.2 ZN.5: 5 residues within 4Å: Chain B: C.97, C.100, C.103, C.111, L.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111

2 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.3: 19 residues within 4Å: Chain A: R.47, G.199, L.200, G.201, G.202, V.203, D.223, I.224, N.225, K.228, E.267, V.268, I.269, G.270, R.271, T.274, V.292, G.293, R.369 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:L.200, A:G.201, A:G.201, A:V.203, A:I.224, A:K.228, A:E.267, A:R.271, A:R.271, A:V.292, A:G.293, A:R.369 Water bridges: A:G.204 Salt bridges: A:R.47, A:K.228 APR.6: 19 residues within 4Å: Chain B: R.47, G.199, L.200, G.201, G.202, V.203, D.223, I.224, N.225, K.228, E.267, V.268, I.269, G.270, R.271, T.274, V.292, G.293, R.369 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:L.200, B:G.201, B:G.201, B:V.203, B:I.224, B:K.228, B:E.267, B:R.271, B:R.271, B:V.292, B:G.293, B:R.369 Water bridges: B:G.204 Salt bridges: B:R.47, B:K.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plapp, B.V. et al., Horse Liver Alcohol Dehydrogenase: Zinc Coordination and Catalysis. Biochemistry (2017)

Release Date

2017-05-03

Peptides

Alcohol dehydrogenase E chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Alcohol dehydrogenase E chain

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