SMTL ID : 5adh.1

INTERDOMAIN MOTION IN LIVER ALCOHOL DEHYDROGENASE. STRUCTURAL AND ENERGETIC ANALYSIS OF THE HINGE BENDING MODE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: C.46, H.67, C.174 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.46, A:H.67, A:C.174, H2O.2 ZN.2: 5 residues within 4Å: Chain A: C.97, G.98, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.5: 3 residues within 4Å: Chain B: C.46, H.67, C.174 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.46, B:H.67, B:C.174, H2O.13 ZN.6: 5 residues within 4Å: Chain B: C.97, G.98, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111

2 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.3: 15 residues within 4Å: Chain A: R.47, G.199, L.200, G.201, G.202, V.203, D.223, I.224, K.228, V.268, I.269, G.270, R.271, V.292, G.293 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:L.200, A:G.202, A:V.203, A:I.224, A:K.228, A:R.271, A:V.292 Water bridges: A:R.47, A:K.228, A:V.292, A:G.365, A:G.365, A:R.369, A:R.369 Salt bridges: A:R.47 APR.7: 15 residues within 4Å: Chain B: R.47, G.199, L.200, G.201, G.202, V.203, D.223, I.224, K.228, V.268, I.269, G.270, R.271, V.292, G.293 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:L.200, B:G.202, B:V.203, B:I.224, B:K.228, B:R.271, B:V.292 Water bridges: B:R.47, B:K.228, B:V.292, B:G.365, B:G.365, B:R.369, B:R.369 Salt bridges: B:R.47

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 5 residues within 4Å: Chain A: S.48, L.116, V.294, P.296 Chain B: L.309 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.116, B:L.309 MPD.8: 5 residues within 4Å: Chain A: L.309 Chain B: S.48, L.116, V.294, P.296 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.116, A:L.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colonna-Cesari, F. et al., Interdomain motion in liver alcohol dehydrogenase. Structural and energetic analysis of the hinge bending mode. J.Biol.Chem. (1986)

Release Date

1984-07-18

Peptides

APO-LIVER ALCOHOL DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

APO-LIVER ALCOHOL DEHYDROGENASE

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