SMTL ID : 1hyt.1

RE-DETERMINATION AND REFINEMENT OF THE COMPLEX OF BENZYLSUCCINIC ACID WITH THERMOLYSIN AND ITS RELATION TO THE COMPLEX WITH CARBOXYPEPTIDASE A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:E.177, A:D.185, A:E.190 CA.2: 6 residues within 4Å: Chain A: E.177, K.182, N.183, D.185, E.190 Ligands: CA.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.1, H2O.3 CA.3: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.59, A:Q.61, H2O.3, H2O.4, H2O.4 CA.4: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.193, A:T.194, A:I.197, A:D.200, H2O.1

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166 Ligands: BZS.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 3 residues within 4Å: Chain A: H.216, S.218, Y.251 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:H.216

1 x BZS: L-BENZYLSUCCINIC ACID(Non-covalent)

BZS.7: 15 residues within 4Å: Chain A: N.112, A.113, F.130, L.133, V.139, H.142, E.143, H.146, Y.157, E.166, I.188, L.202, R.203, H.231 Ligands: ZN.5 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.130, A:L.133, A:V.139, A:I.188, A:L.202 Hydrogen bonds: A:N.112, A:A.113 Salt bridges: A:H.142, A:H.146, A:R.203, A:H.231, A:H.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hausrath, A.C. et al., Redetermination and refinement of the complex of benzylsuccinic acid with thermolysin and its relation to the complex with carboxypeptidase A. J.Biol.Chem. (1994)

Release Date

1994-07-31

Peptides

THERMOLYSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

THERMOLYSIN

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