SMTL ID : 3zi6.1

Structure of thermolysin solved by SAD from data collected by Direct Data Collection (DDC) using the GRob robot goniometer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x VAL: VALINE(Non-covalent)

VAL.1: 8 residues within 4Å: Chain A: N.112, A.113, L.133, E.143, L.202, R.203, H.231 Ligands: LYS.2 8 PLIP interactions: 6 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: A:L.133, A:L.202 Hydrogen bonds: A:N.112, A:E.143, A:R.203, A:R.203, K.2 Water bridges: V.1

1 x LYS: LYSINE(Non-covalent)

LYS.2: 5 residues within 4Å: Chain A: N.111, N.112, F.130, H.231 Ligands: VAL.1 8 PLIP interactions: 4 interactions with chain A, 4 Ligand-Ligand interactions Hydrophobic interactions: A:F.130 Hydrogen bonds: A:N.111, A:N.112, V.1 Salt bridges: A:H.231 Water bridges: V.1, V.1, K.2

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166, H2O.5

4 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.193, A:T.194, A:T.194, A:I.197, H2O.6 CA.5: 6 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:E.177, A:D.185, A:E.190 CA.6: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.57, A:Q.61, H2O.3, H2O.3, H2O.3 CA.7: 5 residues within 4Å: Chain A: E.177, N.183, D.185, E.190 Ligands: CA.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer, J.L. et al., Recent Progress in Robot-Based Systems for Crystallography and Their Contribution to Drug Discovery. Expert Opin.Drug Discov. (2013)

Release Date

2013-05-01

Peptides

THERMOLYSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

THERMOLYSIN

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