SMTL ID : 1kzk.1

JE-2147-HIV Protease Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.09 Å

Oligo State

homo-dimer

Ligands

1 x JE2: (4R)-3-{(2S,3S)-2-hydroxy-3-[(3-hydroxy-2-methylbenzoyl)amino]-4-phenylbutanoyl}-5,5-dimethyl-N-(2-methylbenzyl)-1,3-thiazolidine-4-carboxamide(Non-covalent)

JE2.1: 29 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.30, V.32, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 25 PLIP interactions: 13 interactions with chain B, 12 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, B:D.30, B:V.32, B:I.47, B:I.47, B:I.47, B:P.81, B:V.82, B:I.84, A:L.23, A:A.28, A:D.29, A:V.32 Water bridges: B:G.27, B:G.48, B:I.50, A:R.8, A:I.50 Hydrogen bonds: A:D.25, A:G.27, A:G.27, A:D.30, A:D.30, A:D.30

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: K.20, E.21, N.83 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: M.36, N.37 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: L.10, E.21, A.22, E.34, V.82, N.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.21, A:N.83, A:N.83 EDO.5: 2 residues within 4Å: Chain A: K.41, W.42 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.42 EDO.6: 7 residues within 4Å: Chain A: R.14, I.15, G.16, G.17, P.63, V.64, E.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.17 EDO.7: 4 residues within 4Å: Chain A: N.98, F.99 Chain B: G.94, T.96 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.94 Water bridges: B:T.96, B:T.96 EDO.11: 7 residues within 4Å: Chain B: E.35, K.55, V.56, R.57, V.77, G.78, P.79 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.35, B:R.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reiling, K.K. et al., Anisotropic Dynamics of the JE-2147-HIV Protease Complex: Drug Resistance and Thermodynamic Binding Mode Examined in a 1.09 A Structure. Biochemistry (2002)

Release Date

2002-04-03

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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