SMTL ID : 1lt9.2 (1 other biounit)

Crystal Structure of Recombinant Human Fibrinogen Fragment D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain B: M.213, N.216 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.213, B:N.216

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain B: D.233, D.235, W.237 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.233, B:D.233, B:D.235, B:W.237, H2O.3 CA.3: 4 residues within 4Å: Chain B: D.113, G.115, D.250 Chain C: E.37 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Metal complexes: B:D.113, B:D.113, B:G.115, B:D.250, C:E.37 CA.4: 5 residues within 4Å: Chain C: D.223, D.225, F.227, E.228, G.229 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.223, C:D.223, C:F.227, C:G.229, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kostelansky, M.S. et al., 2.8 A Crystal Structures of Recombinant Fibrinogen Fragment D with and without Two Peptide Ligands: GHRP Binding to the "b" Site Disrupts Its Nearby Calcium-binding Site. Biochemistry (2002)

Release Date

2002-11-06

Peptides

Fibrinogen alpha/alpha-E chain: A
Fibrinogen beta chain: B
Fibrinogen gamma chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Fibrinogen alpha/alpha-E chain

Fibrinogen beta chain

Fibrinogen gamma chain

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