SMTL ID : 1rf0.2 (1 other biounit)

Crystal Structure of Fragment D of gammaE132A Fibrinogen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain B: M.213, N.216 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.216

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain B: D.233, D.235, W.237 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.233, B:D.233, B:D.235, B:W.237, H2O.2 CA.3: 3 residues within 4Å: Chain B: D.113, G.115, D.250 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.113, B:G.115, B:D.250 CA.4: 4 residues within 4Å: Chain C: D.223, D.225, F.227, G.229 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.223, C:D.223, C:D.225, C:F.227, C:G.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kostelansky, M.S. et al., Calcium-Binding Site beta2, Adjacent to the "b" Polymerization Site, Modulates Lateral Aggregation of Protofibrils during Fibrin Polymerization. Biochemistry (2004)

Release Date

2004-03-16

Peptides

Fibrinogen alpha/alpha-E chain: A
Fibrinogen beta chain: B
Fibrinogen gamma chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Fibrinogen alpha/alpha-E chain

Fibrinogen beta chain

Fibrinogen gamma chain

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