2ffd.2 | SWISS-MODEL Template Library

SMTL ID : 2ffd.2 (1 other biounit)

Fibrinogen Fragment D with "A" knob peptide mimic GPRVVE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GLY- PRO- ARG- VAL: GLY-PRO-ARG-VAL-VAL-GLU peptide(Non-covalent)

GLY-PRO-ARG-VAL.1:	13 residues within 4Å: Chain B: L.212, N.216, M.219, T.220, W.237, E.249, D.250, R.258, C.259, H.260, T.283, D.284, M.290 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.212, B:T.220, B:W.237 Hydrogen bonds: B:R.258, B:R.258, B:C.259, B:H.260, B:D.284 Salt bridges: B:E.249, B:D.250
GLY-PRO-ARG-VAL.2:	11 residues within 4Å: Chain C: F.200, D.206, T.210, F.227, Q.234, D.235, K.243, C.244, H.245, Y.268, D.269 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:F.200, C:F.227, C:F.227, C:Y.268 Hydrogen bonds: C:Q.234, C:K.243, C:C.244, C:H.245, C:D.269, C:D.269 Salt bridges: C:D.235 pi-Cation interactions: C:Y.268

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)