SMTL ID : 1re3.1 (1 other biounit)

Crystal Structure of Fragment D of BbetaD398A Fibrinogen with the Peptide Ligand Gly-His-Arg-Pro-Amide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLY- HIS- ARG- PRO: GHRP peptide(Non-covalent)

GLY-HIS-ARG-PRO.1: 12 residues within 4Å: Chain C: D.203, D.206, F.209, T.210, F.227, Q.234, D.235, K.243, C.244, H.245, Y.268, D.269 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:T.210, C:F.227, C:K.243 Hydrogen bonds: C:Q.234, C:K.243, C:C.244, C:H.245, C:D.269 Water bridges: C:S.205, C:D.235, C:D.235 Salt bridges: C:D.235, C:K.243 pi-Cation interactions: C:Y.268

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain B: M.213, N.216 No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain B: D.233, D.235, W.237 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.233, B:D.233, B:D.235, B:W.237, H2O.3 CA.4: 4 residues within 4Å: Chain C: D.223, D.225, F.227, G.229 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.223, C:D.225, C:F.227, C:G.229, H2O.5 CA.5: 6 residues within 4Å: Chain C: D.199, G.201, D.202, D.203, P.204, D.206 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.199, C:G.201, C:D.203, C:D.206, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kostelansky, M.S. et al., BbetaGlu397 and BbetaAsp398 but not BbetaAsp432 are required for "B:b" interactions. Biochemistry (2004)

Release Date

2004-05-25

Peptides

Fibrinogen alpha/alpha-E chain: A
Fibrinogen beta chain: B
Fibrinogen gamma chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fibrinogen alpha/alpha-E chain

Fibrinogen beta chain

Fibrinogen gamma chain

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