SMTL ID : 1nam.1

MURINE ALLOREACTIVE SCFV TCR-PEPTIDE-MHC CLASS I MOLECULE COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ARG- GLY- TYR- VAL- TYR- GLN- GLY- LEU: Nucleocapsid(Non-covalent)

ARG-GLY-TYR-VAL-TYR-GLN-GLY-LEU.1: 29 residues within 4Å: Chain A: Y.97 Chain B: D.96, V.98 Chain C: Y.7, V.9, Y.59, R.62, E.63, K.66, N.70, S.73, F.74, D.77, T.80, Y.84, V.97, S.99, Q.114, Y.116, T.143, K.146, W.147, E.152, R.155, L.156, Y.159, T.163, W.167, Y.171 37 PLIP interactions: 31 interactions with chain C, 1 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: C:V.9, C:K.66, C:F.74, C:V.97, C:Y.116, C:T.143, C:W.147, C:Y.159, C:Y.159, C:Y.159, C:T.163, C:W.167, A:Y.97, B:V.98 Hydrogen bonds: C:Y.7, C:E.63, C:K.66, C:N.70, C:N.70, C:S.73, C:D.77, C:S.99, C:T.143, C:K.146, C:R.155, C:R.155, C:Y.159, C:Y.171, B:D.96, B:V.98, B:N.100 Water bridges: C:E.24, C:T.80, C:Y.116, B:V.98 Salt bridges: C:E.63, C:K.146

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: K.55, E.56, N.57, N.66, F.67, Q.68 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reiser, J.-B. et al., CDR3 loop flexibility contributes to the degeneracy of TCR recognition. Nat.Immunol. (2003)

Release Date

2003-03-11

Peptides

BM3.3 T Cell Receptor alpha-Chain: A
BM3.3 T Cell Receptor beta-Chain: B
H-2 class I histocompatibility antigen, K-B alpha chain precursor: C
Beta-2-microglobulin: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

BM3.3 T Cell Receptor alpha-Chain

BM3.3 T Cell Receptor beta-Chain

H-2 class I histocompatibility antigen, K-B alpha chain precursor

Beta-2-microglobulin

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