SMTL ID : 1wbz.2 (1 other biounit)

CRYSTAL STRUCTURES OF MURINE MHC CLASS I H-2 Db AND Kb MOLECULES IN COMPLEX WITH CTL EPITOPES FROM INFLUENZA A VIRUS: IMPLICATIONS FOR TCR REPERTOIRE SELECTION AND IMMUNODOMINANCE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SER- SER- TYR- ARG- ARG- PRO- VAL- GLY- ILE: INFLUENZA A PEPTIDE(Non-covalent)

SER-SER-TYR-ARG-ARG-PRO-VAL-GLY-ILE.1: 23 residues within 4Å: Chain A: Y.7, E.24, E.63, Q.65, K.66, G.69, N.70, F.74, D.77, T.80, Y.84, Q.114, Y.116, Y.123, T.143, K.146, W.147, E.152, R.155, L.156, Y.159, W.167, Y.171 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:K.66, A:W.147, A:L.156, A:Y.159, A:Y.159 Hydrogen bonds: A:Y.7, A:E.24, A:E.63, A:Q.65, A:K.66, A:N.70, A:N.70, A:D.77, A:Y.84, A:K.146, A:R.155, A:Y.171, A:Y.171 Water bridges: A:E.63, A:S.73, A:D.77, A:T.80, A:S.99, A:S.99, A:S.99, A:Y.116, A:Y.159, A:Y.159 Salt bridges: A:D.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meijers, R. et al., Crystal Structures of Murine Mhc Class I H-2 D(B) and K(B) Molecules in Complex with Ctl Epitopes from Influenza a Virus: Implications for Tcr Repertoire Selection and Immunodominance. J.Mol.Biol. (2005)

Release Date

2005-01-19

Peptides

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN PRECURSOR: A
BETA-2MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN PRECURSOR

BETA-2MICROGLOBULIN

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