SMTL ID : 1o5m.1

Structure of FPT bound to the inhibitor SCH66336

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362, H2O.30

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 17 residues within 4Å: Chain A: K.164, Y.166, Y.200, H.201 Chain B: W.102, R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 Ligands: 336.3 20 PLIP interactions: 17 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:W.102, B:Y.205, B:Y.251, B:W.303, A:Y.200 Hydrogen bonds: B:Y.300 Water bridges: B:R.291, B:R.291, B:R.291, B:K.294, B:K.294, B:K.294, B:K.294, A:K.164 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x 336: 4-{2-[4-(3,10-DIBROMO-8-CHLORO-6,11-DIHYDRO-5H-BENZO[5,6]CYCLOHEPTA[1,2-B]PYRIDIN-11-YL)PIPERIDIN-1-YL]-2-OXOETHYL}PIPERIDINE-1-CARBOXAMIDE(Non-covalent)

336.3: 18 residues within 4Å: Chain A: K.164, N.165, Y.166, H.201 Chain B: A.92, Y.93, C.95, L.96, S.99, W.102, W.106, W.303, S.357, R.358, D.359, Y.361, Y.365 Ligands: FPP.2 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.96, B:W.106, B:W.106, B:D.359, B:Y.361, B:Y.361, B:Y.361 Water bridges: B:Y.361 pi-Stacking: B:W.102, B:W.102 Halogen bonds: B:S.99, B:Y.365

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strickland, C.L. et al., Tricyclic Farnesyl Protein Transferase Inhibitors: Crystallographic and Calorimetric Studies of Structure-Activity Relationships. J.Med.Chem. (1999)

Release Date

2003-10-21

Peptides

Protein farnesyltransferase alpha subunit: A
Protein farnesyltransferase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase alpha subunit

Protein farnesyltransferase beta subunit

Related Entries With Identical Sequence