SMTL ID : 1oqx.1

G-2 glycovariant of human IgG Fc bound to minimized version of Protein A called Z34C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- FUL: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUL.1: 11 residues within 4Å: Chain A: F.6, F.8, V.27, V.29, D.30, Q.60, Y.61, N.62, T.64, R.66 Ligands: NAG-NAG-BMA-MAN-BMA-FUC.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.62, A:R.66, A:R.66

1 x NAG- NAG- BMA- MAN- BMA- FUC: alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-BMA-FUC.2: 11 residues within 4Å: Chain B: F.6, F.8, V.27, V.29, D.30, Q.60, N.62, T.64, R.66 Ligands: NAG-NAG-BMA-MAN-MAN-FUL.1, NAG-NAG-BMA-MAN-MAN-FUL.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raju, T.S. et al., Impact of Fc Glycans on The Effector Functions Vary with the Antibody mechanism of Action. To be Published

Release Date

2003-03-25

Peptides

immunoglobulin gamma-1 heavy chain constant region: AB
Protein A Z34C: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

immunoglobulin gamma-1 heavy chain constant region

Protein A Z34C

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