- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 8.20 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
BCB.5: 30 residues within 4Å:- Chain C: F.98, F.122, P.125, M.128, F.129, L.132, V.158, N.159, F.161, G.162, Y.163, W.168, H.169, H.174, S.177, V.178, L.181, F.182, I.241, F.242, G.245, G.248, T.249
- Chain D: L.185, Y.196, Y.209
- Ligands: BCB.6, BPB.7, BCB.8, BCB.9
18 PLIP interactions:18 interactions with chain C,- Hydrophobic interactions: C:F.98, C:F.98, C:F.122, C:P.125, C:V.158, C:F.161, C:Y.163, C:W.168, C:W.168, C:W.168, C:V.178, C:F.182, C:I.241, C:F.242, C:F.242
- Hydrogen bonds: C:S.177
- pi-Stacking: C:W.168
- Metal complexes: C:H.174
BCB.6: 20 residues within 4Å:- Chain C: V.47, I.50, F.129, L.132, F.147, I.151, L.152, H.154, L.155, V.158
- Chain D: Y.196, H.201, G.202, I.205, G.206, Y.209, L.213
- Ligands: BCB.5, BPB.7, BCB.9
13 PLIP interactions:7 interactions with chain C, 6 interactions with chain D,- Hydrophobic interactions: C:I.50, C:L.132, C:F.147, C:I.151, C:L.155, C:V.158, D:Y.196, D:I.205, D:I.205, D:Y.209, D:L.213
- Metal complexes: C:H.154
- pi-Stacking: D:Y.209
BCB.8: 21 residues within 4Å:- Chain C: H.169, M.175, V.178, S.179, F.182, V.183, M.186
- Chain D: M.121, F.155, V.156, I.159, V.174, I.178, W.179, H.181, I.182, L.185
- Ligands: BCB.5, BCB.9, BPB.10, NS5.13
14 PLIP interactions:10 interactions with chain D, 4 interactions with chain C,- Hydrophobic interactions: D:F.155, D:V.156, D:I.159, D:V.174, D:I.178, D:I.182, D:L.185, D:L.185, C:V.178, C:V.183
- pi-Stacking: D:H.181, C:F.182, C:F.182
- pi-Cation interactions: D:H.181
BCB.9: 30 residues within 4Å:- Chain C: F.182
- Chain D: G.63, A.66, I.67, M.121, S.124, L.125, F.155, V.156, I.159, W.184, L.185, T.186, F.188, S.189, F.195, Y.196, H.201, S.204, I.205, A.208, Y.209, V.275, M.276, A.279, I.283
- Ligands: BCB.5, BCB.6, BCB.8, BPB.10
17 PLIP interactions:16 interactions with chain D, 1 interactions with chain C,- Hydrophobic interactions: D:A.66, D:I.67, D:L.125, D:F.155, D:F.155, D:V.156, D:W.184, D:L.185, D:F.188, D:Y.196, D:I.205, D:I.205, D:A.208, D:Y.209, C:F.182
- Hydrogen bonds: D:S.204
- Metal complexes: D:H.201
- 2 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
BPB.7: 28 residues within 4Å:- Chain C: F.42, I.43, G.46, I.50, I.90, C.93, A.94, A.97, F.98, W.101, E.105, V.118, A.121, F.122, P.125, Y.149, G.150, I.151, A.238, F.242
- Chain D: Y.209, G.212, L.213, A.216, W.251, I.255
- Ligands: BCB.5, BCB.6
15 PLIP interactions:13 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:I.43, C:I.43, C:I.43, C:I.50, C:I.90, C:A.94, C:W.101, C:A.121, C:F.122, C:F.122, C:P.125, C:Y.149, C:Y.149, D:Y.209, D:L.213
BPB.10: 20 residues within 4Å:- Chain C: F.182, M.186, L.190, V.221
- Chain D: A.59, F.60, G.63, S.64, I.67, S.124, L.125, W.128, V.132, I.145, N.148, F.149, S.272, M.276
- Ligands: BCB.8, BCB.9
9 PLIP interactions:8 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:A.59, D:F.60, D:F.60, D:I.67, D:W.128, D:W.128, D:N.148, C:F.182
- pi-Stacking: D:F.149
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x MQ7: MENAQUINONE-7(Non-covalent)
MQ7.12: 22 residues within 4Å:- Chain C: V.27, Y.30, F.31, V.32, G.36, I.40, W.101, R.104
- Chain D: A.217, H.218, T.221, A.247, A.248, W.251, I.255, N.258, A.259, T.260, I.261, V.264, W.267, F.271
19 PLIP interactions:13 interactions with chain D, 6 interactions with chain C- Hydrophobic interactions: D:A.217, D:A.247, D:A.248, D:W.251, D:W.251, D:I.255, D:A.259, D:V.264, D:W.267, D:W.267, D:W.267, D:F.271, C:Y.30, C:Y.30, C:Y.30, C:V.32, C:I.40, C:I.40
- Hydrogen bonds: D:A.259
- 1 x NS5: 15-cis-1,2-dihydroneurosporene(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johansson, L.C. et al., Lipidic Phase Membrane Protein Serial Femtosecond Crystallography. Nat.Methods (2012)
- Release Date
- 2012-02-15
- Peptides
- PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT: A
REACTION CENTER PROTEIN H CHAIN: B
REACTION CENTER PROTEIN L CHAIN: C
REACTION CENTER PROTEIN M CHAIN: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
HC
LD
M - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 8.20 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
- 2 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x MQ7: MENAQUINONE-7(Non-covalent)
- 1 x NS5: 15-cis-1,2-dihydroneurosporene(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johansson, L.C. et al., Lipidic Phase Membrane Protein Serial Femtosecond Crystallography. Nat.Methods (2012)
- Release Date
- 2012-02-15
- Peptides
- PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT: A
REACTION CENTER PROTEIN H CHAIN: B
REACTION CENTER PROTEIN L CHAIN: C
REACTION CENTER PROTEIN M CHAIN: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
HC
LD
M - Membrane
-
We predict this structure to be a membrane protein.