- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 4 x HEC: HEME C(Non-covalent)(Covalent)
- 4 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
BCB.5: 31 residues within 4Å:- Chain C: F.98, P.125, I.126, M.128, F.129, L.132, V.158, N.159, F.161, G.162, Y.163, W.168, H.169, H.174, S.177, V.178, L.181, F.182, I.241, F.242, G.245, G.248, T.249
- Chain D: L.185, Y.196, Y.209
- Ligands: BCB.6, BPB.7, BCB.11, BCB.12, MQ7.14
18 PLIP interactions:18 interactions with chain C,- Hydrophobic interactions: C:F.98, C:P.125, C:F.161, C:Y.163, C:W.168, C:W.168, C:W.168, C:V.178, C:L.181, C:F.182, C:I.241, C:F.242, C:F.242, C:F.242
- Hydrogen bonds: C:S.177, C:T.249
- pi-Stacking: C:W.168
- Metal complexes: C:H.174
BCB.6: 21 residues within 4Å:- Chain C: V.47, I.50, F.129, L.132, F.147, I.151, L.152, H.154, L.155, V.158
- Chain D: Y.196, G.202, I.205, G.206, Y.209, G.210, L.213
- Ligands: BCB.5, BPB.7, BCB.12, MQ7.14
13 PLIP interactions:9 interactions with chain C, 4 interactions with chain D,- Hydrophobic interactions: C:V.47, C:I.50, C:F.129, C:L.132, C:F.147, C:F.147, C:L.155, C:V.158, D:Y.196, D:I.205, D:I.205
- Metal complexes: C:H.154
- pi-Stacking: D:Y.209
BCB.11: 22 residues within 4Å:- Chain C: H.169, M.175, V.178, S.179, F.182, V.183, M.186
- Chain D: M.121, F.155, V.156, I.159, V.174, I.178, W.179, H.181, I.182, L.185
- Ligands: BCB.5, MPG.9, BCB.12, BPB.13, NS5.15
13 PLIP interactions:8 interactions with chain D, 5 interactions with chain C,- Hydrophobic interactions: D:F.155, D:V.156, D:I.159, D:V.174, D:I.178, D:I.182, D:L.185, C:V.178, C:F.182, C:V.183, C:V.183
- Metal complexes: D:H.181
- pi-Stacking: C:F.182
BCB.12: 31 residues within 4Å:- Chain C: V.158, Y.163, F.182
- Chain D: G.63, I.70, L.125, F.149, A.152, F.155, V.156, I.159, W.184, L.185, T.186, F.188, S.189, F.195, Y.196, H.201, S.204, I.205, A.208, Y.209, V.275, M.276, A.279, I.283
- Ligands: BCB.5, BCB.6, BCB.11, BPB.13
22 PLIP interactions:22 interactions with chain D,- Hydrophobic interactions: D:I.70, D:L.125, D:F.149, D:A.152, D:F.155, D:F.155, D:V.156, D:W.184, D:L.185, D:F.188, D:F.195, D:F.195, D:Y.196, D:Y.196, D:I.205, D:A.208, D:Y.209, D:A.279
- Hydrogen bonds: D:Y.196, D:S.204
- Salt bridges: D:H.201
- Metal complexes: D:H.201
- 2 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
BPB.7: 29 residues within 4Å:- Chain C: F.42, I.43, I.50, A.94, A.97, F.98, W.101, E.105, V.118, A.121, F.122, P.125, F.129, Y.149, G.150, I.151, H.154, A.238, S.239, F.242
- Chain D: Y.209, G.212, L.213, A.216, W.251, I.255
- Ligands: BCB.5, BCB.6, MQ7.14
17 PLIP interactions:15 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:I.43, C:I.43, C:I.50, C:A.94, C:A.97, C:A.121, C:F.122, C:F.122, C:F.122, C:P.125, C:F.129, C:Y.149, C:Y.149, C:F.242, D:Y.209, D:A.216
- Hydrogen bonds: C:E.105
BPB.13: 23 residues within 4Å:- Chain C: F.182, M.186, L.190, V.220, V.221
- Chain D: A.59, F.60, G.63, S.64, I.67, S.124, L.125, W.128, V.132, I.145, N.148, F.149, A.152, S.272, M.276
- Ligands: BCB.11, BCB.12, NS5.15
12 PLIP interactions:9 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:A.59, D:F.60, D:I.67, D:W.128, D:W.128, D:N.148, D:F.149, D:F.149, C:F.182, C:M.186, C:L.190
- pi-Stacking: D:F.149
- 3 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)
MPG.8: 8 residues within 4Å:- Chain C: G.115, W.116, H.117, L.120, V.124, R.232, L.235, S.239
10 PLIP interactions:3 interactions with chain D, 7 interactions with chain C- Water bridges: D:A.2, D:R.227, D:R.227
- Hydrophobic interactions: C:L.120, C:L.120, C:V.124, C:R.232, C:L.235
- Hydrogen bonds: C:W.116
- Salt bridges: C:H.117
MPG.9: 14 residues within 4Å:- Chain C: F.180, V.183, A.187, L.190, H.191, L.194, F.217, S.224, I.225, G.226, I.230, N.240
- Ligands: BCB.11, MPG.16
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:V.183, C:A.187, C:I.230
- Hydrogen bonds: C:N.214, C:I.225, C:G.226
- Water bridges: C:S.224
- Salt bridges: C:H.191
MPG.16: 7 residues within 4Å:- Chain C: V.221, G.222
- Chain D: G.31, K.32, I.47, G.48
- Ligands: MPG.9
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:I.47
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x MQ7: MENAQUINONE-7(Non-covalent)
MQ7.14: 26 residues within 4Å:- Chain C: Y.30, G.36, I.40, I.43, W.101, R.104
- Chain D: L.214, A.217, H.218, T.221, V.244, A.247, A.248, W.251, I.255, F.257, N.258, A.259, T.260, I.261, V.264, W.267, F.271
- Ligands: BCB.5, BCB.6, BPB.7
25 PLIP interactions:8 interactions with chain C, 17 interactions with chain D- Hydrophobic interactions: C:Y.30, C:Y.30, C:Y.30, C:I.40, C:I.40, C:I.43, C:W.101, C:W.101, D:L.214, D:H.218, D:A.247, D:A.248, D:W.251, D:I.255, D:I.255, D:F.257, D:F.257, D:A.259, D:I.261, D:V.264, D:W.267, D:W.267, D:F.271
- Hydrogen bonds: D:T.221, D:A.259
- 1 x NS5: 15-cis-1,2-dihydroneurosporene(Non-covalent)
NS5.15: 19 residues within 4Å:- Chain D: I.67, L.71, M.74, F.89, L.115, G.118, L.119, T.122, G.160, C.161, W.170, V.174, P.175, F.176, G.177, I.178, H.181
- Ligands: BCB.11, BPB.13
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:I.67, D:L.115, D:W.170, D:V.174, D:F.176, D:F.176, D:F.176, D:I.178
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wohri, A.B. et al., Lipidic sponge phase crystal structure of a photosynthetic reaction center reveals lipids on the protein surface. Biochemistry (2009)
- Release Date
- 2009-09-22
- Peptides
- PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT: A
REACTION CENTER PROTEIN H CHAIN: B
REACTION CENTER PROTEIN L CHAIN: C
REACTION CENTER PROTEIN M CHAIN: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
HC
LD
M - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 4 x HEC: HEME C(Non-covalent)(Covalent)
- 4 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
- 2 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
- 3 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x MQ7: MENAQUINONE-7(Non-covalent)
- 1 x NS5: 15-cis-1,2-dihydroneurosporene(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wohri, A.B. et al., Lipidic sponge phase crystal structure of a photosynthetic reaction center reveals lipids on the protein surface. Biochemistry (2009)
- Release Date
- 2009-09-22
- Peptides
- PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT: A
REACTION CENTER PROTEIN H CHAIN: B
REACTION CENTER PROTEIN L CHAIN: C
REACTION CENTER PROTEIN M CHAIN: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
HC
LD
M - Membrane
-
We predict this structure to be a membrane protein.