SMTL ID : 1pvo.1

X-ray crystal structure of Rho transcription termination factor in complex with ssRNA substrate and ANPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-hexamer

Ligands

5 x U- C: 5'-R(P*UP*C)-3'(Non-covalent)

U-C.1: 12 residues within 4Å: Chain A: L.58, F.62, F.64, R.66, G.75, D.78, Y.80, R.102, E.108, R.109, Y.110, A.112 Protein-ligand interaction information (PLIP) not available U-C.2: 12 residues within 4Å: Chain C: L.58, F.62, F.64, R.66, G.75, D.78, Y.80, R.102, G.107, E.108, R.109, Y.110 Protein-ligand interaction information (PLIP) not available U-C.3: 9 residues within 4Å: Chain D: F.62, F.64, R.66, A.74, Y.80, R.102, E.108, R.109, Y.110 Protein-ligand interaction information (PLIP) not available U-C.4: 12 residues within 4Å: Chain E: L.58, F.62, F.64, R.66, A.74, D.78, Y.80, R.102, G.107, E.108, R.109, Y.110 Protein-ligand interaction information (PLIP) not available U-C.5: 12 residues within 4Å: Chain F: L.58, F.62, F.64, R.66, A.74, G.75, D.78, Y.80, R.102, E.108, R.109, Y.110 Protein-ligand interaction information (PLIP) not available

6 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.6: 7 residues within 4Å: Chain A: K.181, A.182, G.183, K.184, T.185, M.186, F.355 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.181, A:A.182, A:G.183, A:K.184, A:T.185, A:T.185, A:T.185, A:M.186 ANP.7: 11 residues within 4Å: Chain A: R.366 Chain B: T.158, P.180, K.181, A.182, G.183, K.184, T.185, M.186, R.212, F.355 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.158, B:T.158, B:K.181, B:A.182, B:G.183, B:K.184, B:K.184, B:K.184, B:T.185, B:R.212, B:R.212, A:R.366 pi-Stacking: B:F.355, B:F.355 ANP.8: 10 residues within 4Å: Chain B: R.366 Chain C: P.180, K.181, A.182, G.183, K.184, T.185, M.186, R.212, F.355 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:K.181, C:A.182, C:G.183, C:K.184, C:K.184, C:T.185, C:T.185, C:T.185, C:M.186, C:R.212, C:F.355, B:R.366 ANP.9: 10 residues within 4Å: Chain C: R.366 Chain D: P.180, K.181, A.182, G.183, K.184, T.185, M.186, R.212, F.355 12 PLIP interactions: 1 interactions with chain C, 11 interactions with chain D Hydrogen bonds: C:R.366, D:T.158, D:T.158, D:K.181, D:A.182, D:G.183, D:K.184, D:K.184, D:T.185, D:M.186, D:R.212 pi-Stacking: D:F.355 ANP.10: 12 residues within 4Å: Chain D: R.366, E.369 Chain E: P.180, K.181, A.182, G.183, K.184, T.185, M.186, R.212, R.353, F.355 10 PLIP interactions: 9 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:K.181, E:A.182, E:G.183, E:K.184, E:K.184, E:T.185, E:R.212, E:R.353, D:R.366 pi-Stacking: E:F.355 ANP.11: 10 residues within 4Å: Chain E: R.366, E.369 Chain F: P.179, K.181, A.182, G.183, K.184, T.185, M.186, F.355 10 PLIP interactions: 9 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:K.181, F:A.182, F:G.183, F:K.184, F:K.184, F:T.185, F:T.185, E:R.366 pi-Stacking: F:F.355, F:F.355

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skordalakes, E. et al., Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading. Cell(Cambridge,Mass.) (2003)

Release Date

2003-07-22

Peptides

Transcription termination factor rho: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Transcription termination factor rho

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