SMTL ID : 1qbq.1

STRUCTURE OF RAT FARNESYL PROTEIN TRANSFERASE COMPLEXED WITH A CVIM PEPTIDE AND ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ACE- CYS- VAL- ILE- MSE: ACETYL-CYS-VAL-ILE-SELENOMET-COOH PEPTIDE(Non-covalent)

ACE-CYS-VAL-ILE-MSE.1: 18 residues within 4Å: Chain A: Y.87, K.120, Y.122, Q.123 Chain B: A.98, S.99, W.102, W.106, H.149, A.151, P.152, R.202, D.297, C.299, Y.361, H.362 Ligands: ZN.3, HFP.4 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.102, B:W.106, B:A.151 Hydrogen bonds: B:R.202, A:Q.123 Water bridges: B:H.362, A:Y.122

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: Q.36, R.60, N.86 Chain B: G.145, Q.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.36, A:N.86

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: ACE-CYS-VAL-ILE-MSE.1 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x HFP: ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID(Non-covalent)

HFP.4: 16 residues within 4Å: Chain A: K.120, Y.122, Y.156 Chain B: W.102, R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, Y.300, W.303, Y.361 Ligands: ACE-CYS-VAL-ILE-MSE.1, ACE-CYS-VAL-ILE-MSE.1 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:W.102, B:R.202, B:Y.205, B:Y.251, B:W.303, A:Y.156 Hydrogen bonds: B:R.291, A:K.120 Water bridges: B:K.294, B:K.294, B:K.294, A:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strickland, C.L. et al., Crystal structure of farnesyl protein transferase complexed with a CaaX peptide and farnesyl diphosphate analogue. Biochemistry (1998)

Release Date

1999-06-18

Peptides

FPT ALPHA-SUBUNIT: A
FPT BETA-SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FPT ALPHA-SUBUNIT

FPT BETA-SUBUNIT

Related Entries With Identical Sequence