SMTL ID : 1rhq.1

CRYSTAL STRUCTURE OF THE COMPLEX OF CASPASE-3 WITH A BROMOMETHOXYPHENYL INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 0ZZ: 5-S-benzyl-3-({N-[(5-bromo-2-methoxyphenyl)acetyl]-L-valyl}amino)-2,3-dideoxy-5-thio-D-erythro-pentonic acid(Covalent)

0ZZ.1: 16 residues within 4Å: Chain A: R.36, S.92, H.93, G.94, E.95, F.100, Q.133, A.134, C.135 Chain B: Y.29, S.30, W.31, R.32, S.74, F.75, S.76 17 PLIP interactions: 9 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:Y.29, B:W.31, A:E.95, A:F.100 Hydrogen bonds: B:S.30, B:S.30, B:R.32, B:R.32, B:R.32, A:H.93, A:G.94, A:Q.133, A:C.135 Salt bridges: B:R.32, A:R.36, A:H.93 pi-Stacking: B:W.31 0ZZ.2: 16 residues within 4Å: Chain C: R.36, S.92, H.93, G.94, E.95, F.100, Q.133, A.134, C.135 Chain D: Y.29, S.30, W.31, R.32, S.74, F.75, S.76 17 PLIP interactions: 8 interactions with chain C, 9 interactions with chain D Hydrophobic interactions: C:E.95, C:F.100, D:Y.29, D:W.31 Hydrogen bonds: C:H.93, C:G.94, C:Q.133, C:C.135, D:S.30, D:S.30, D:R.32, D:R.32, D:R.32 Salt bridges: C:R.36, C:H.93, D:R.32 pi-Stacking: D:W.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Becker, J.W. et al., Reducing the Peptidyl Features of Caspase-3 Inhibitors: A Structural Analysis. J.Med.Chem. (2004)

Release Date

2004-05-11

Peptides

Caspase-3: AC
Caspase-3: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
B

D
E

Caspase-3

Caspase-3

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