SMTL ID : 1s9e.1

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R129385

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADB: 4-[4-AMINO-6-(2,6-DICHLORO-PHENOXY)-[1,3,5]TRIAZIN-2-YLAMINO]-BENZONITRILE(Non-covalent)

ADB.1: 15 residues within 4Å: Chain A: P.95, L.100, K.101, K.103, V.106, V.179, Y.181, Y.188, F.227, W.229, L.234, H.235, P.236, Y.318 Chain B: E.138 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.106, A:Y.188, A:Y.318 Hydrogen bonds: A:K.101, A:K.101 pi-Stacking: A:Y.181, A:W.229 Salt bridges: B:E.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Das, K. et al., Roles of Conformational and Positional Adaptability in Structure-Based Design of TMC125-R165335 (Etravirine) and Related Non-nucleoside Reverse Transcriptase Inhibitors That Are Highly Potent and Effective against Wild-Type and Drug-Resistant HIV-1 Variants. J.Med.Chem. (2004)

Release Date

2004-05-11

Peptides

POL polyprotein [Contains:Reverse transcriptase]: A
POL polyprotein [Contains: Reverse transcriptase]: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

POL polyprotein [Contains:Reverse transcriptase]

POL polyprotein [Contains: Reverse transcriptase]

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