- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 12 residues within 4Å:- Chain A: N.43, A.47, D.85, G.89, M.90, N.98, L.99, I.102, G.134, F.135, T.181
- Ligands: MG.1
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:N.43, A:D.85, A:N.98, A:F.135, A:T.181
- Water bridges: A:D.46, A:A.47, A:K.50, A:K.50, A:D.85, A:G.134, A:Y.136
ADP.7: 11 residues within 4Å:- Chain A: K.31
- Chain B: N.43, A.47, D.85, M.90, N.98, L.99, G.134, F.135, T.181
- Ligands: MG.6
18 PLIP interactions:4 interactions with chain A, 14 interactions with chain B- Water bridges: A:K.31, A:K.31, A:K.31, B:E.39, B:E.39, B:N.43, B:D.46, B:A.47, B:D.85, B:G.87, B:N.98, B:N.98, B:N.98
- Salt bridges: A:K.31
- Hydrogen bonds: B:N.43, B:D.85, B:F.135, B:T.181
ADP.11: 12 residues within 4Å:- Chain C: N.43, A.47, D.85, G.89, M.90, N.98, L.99, I.102, G.134, F.135, T.181
- Ligands: MG.10
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:N.43, C:D.85, C:N.98, C:F.135, C:T.181
- Water bridges: C:D.46, C:A.47, C:K.50, C:K.50, C:D.85, C:G.134, C:Y.136
ADP.16: 11 residues within 4Å:- Chain C: K.31
- Chain D: N.43, A.47, D.85, M.90, N.98, L.99, G.134, F.135, T.181
- Ligands: MG.15
18 PLIP interactions:14 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:N.43, D:D.85, D:F.135, D:T.181
- Water bridges: D:E.39, D:E.39, D:N.43, D:D.46, D:A.47, D:D.85, D:G.87, D:N.98, D:N.98, D:N.98, C:K.31, C:K.31, C:K.31
- Salt bridges: C:K.31
ADP.20: 12 residues within 4Å:- Chain E: N.43, A.47, D.85, G.89, M.90, N.98, L.99, I.102, G.134, F.135, T.181
- Ligands: MG.19
12 PLIP interactions:12 interactions with chain E- Hydrogen bonds: E:N.43, E:D.85, E:N.98, E:F.135, E:T.181
- Water bridges: E:D.46, E:A.47, E:K.50, E:K.50, E:D.85, E:G.134, E:Y.136
ADP.25: 11 residues within 4Å:- Chain E: K.31
- Chain F: N.43, A.47, D.85, M.90, N.98, L.99, G.134, F.135, T.181
- Ligands: MG.24
18 PLIP interactions:14 interactions with chain F, 4 interactions with chain E- Hydrogen bonds: F:N.43, F:D.85, F:F.135, F:T.181
- Water bridges: F:E.39, F:E.39, F:N.43, F:D.46, F:A.47, F:D.85, F:G.87, F:N.98, F:N.98, F:N.98, E:K.31, E:K.31, E:K.31
- Salt bridges: E:K.31
ADP.29: 12 residues within 4Å:- Chain G: N.43, A.47, D.85, G.89, M.90, N.98, L.99, I.102, G.134, F.135, T.181
- Ligands: MG.28
15 PLIP interactions:15 interactions with chain G- Hydrogen bonds: G:N.43, G:D.46, G:D.85, G:N.98, G:F.135
- Water bridges: G:E.39, G:D.46, G:A.47, G:K.50, G:K.50, G:D.85, G:E.94, G:Y.136, G:T.181, G:T.181
ADP.34: 11 residues within 4Å:- Chain G: K.31
- Chain H: N.43, A.47, D.85, M.90, N.98, L.99, G.134, F.135, T.181
- Ligands: MG.33
18 PLIP interactions:14 interactions with chain H, 4 interactions with chain G- Hydrogen bonds: H:N.43, H:D.85, H:F.135
- Water bridges: H:E.39, H:N.43, H:D.46, H:D.46, H:A.47, H:D.85, H:G.87, H:N.98, H:N.98, H:N.98, H:T.181, G:K.31, G:K.31, G:K.31
- Salt bridges: G:K.31
ADP.38: 12 residues within 4Å:- Chain I: N.43, A.47, D.85, G.89, M.90, N.98, L.99, I.102, G.134, F.135, T.181
- Ligands: MG.37
15 PLIP interactions:15 interactions with chain I- Hydrogen bonds: I:N.43, I:D.46, I:D.85, I:N.98, I:F.135
- Water bridges: I:E.39, I:D.46, I:A.47, I:K.50, I:K.50, I:D.85, I:E.94, I:Y.136, I:T.181, I:T.181
ADP.43: 11 residues within 4Å:- Chain I: K.31
- Chain J: N.43, A.47, D.85, M.90, N.98, L.99, G.134, F.135, T.181
- Ligands: MG.42
18 PLIP interactions:14 interactions with chain J, 4 interactions with chain I- Hydrogen bonds: J:N.43, J:D.85, J:F.135
- Water bridges: J:E.39, J:N.43, J:D.46, J:D.46, J:A.47, J:D.85, J:G.87, J:N.98, J:N.98, J:N.98, J:T.181, I:K.31, I:K.31, I:K.31
- Salt bridges: I:K.31
ADP.47: 12 residues within 4Å:- Chain K: N.43, A.47, D.85, G.89, M.90, N.98, L.99, I.102, G.134, F.135, T.181
- Ligands: MG.46
15 PLIP interactions:15 interactions with chain K- Hydrogen bonds: K:N.43, K:D.46, K:D.85, K:N.98, K:F.135
- Water bridges: K:E.39, K:D.46, K:A.47, K:K.50, K:K.50, K:D.85, K:E.94, K:Y.136, K:T.181, K:T.181
ADP.52: 11 residues within 4Å:- Chain K: K.31
- Chain L: N.43, A.47, D.85, M.90, N.98, L.99, G.134, F.135, T.181
- Ligands: MG.51
18 PLIP interactions:14 interactions with chain L, 4 interactions with chain K- Hydrogen bonds: L:N.43, L:D.85, L:F.135
- Water bridges: L:E.39, L:N.43, L:D.46, L:D.46, L:A.47, L:D.85, L:G.87, L:N.98, L:N.98, L:N.98, L:T.181, K:K.31, K:K.31, K:K.31
- Salt bridges: K:K.31
- 30 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.3: 7 residues within 4Å:- Chain A: I.146, T.148, R.173, T.176, T.182, T.184
- Ligands: PG4.5
Ligand excluded by PLIPPG4.4: 5 residues within 4Å:- Chain A: G.64, N.65, N.175, T.176, G.178
Ligand excluded by PLIPPG4.5: 4 residues within 4Å:- Chain A: T.84, L.177, T.182
- Ligands: PG4.3
Ligand excluded by PLIPPG4.8: 3 residues within 4Å:- Chain B: K.73, W.218, W.232
Ligand excluded by PLIPPG4.9: 4 residues within 4Å:- Chain B: K.73, H.82, T.84, T.182
Ligand excluded by PLIPPG4.12: 7 residues within 4Å:- Chain C: I.146, T.148, R.173, T.176, T.182, T.184
- Ligands: PG4.14
Ligand excluded by PLIPPG4.13: 5 residues within 4Å:- Chain C: G.64, N.65, N.175, T.176, G.178
Ligand excluded by PLIPPG4.14: 4 residues within 4Å:- Chain C: T.84, L.177, T.182
- Ligands: PG4.12
Ligand excluded by PLIPPG4.17: 3 residues within 4Å:- Chain D: K.73, W.218, W.232
Ligand excluded by PLIPPG4.18: 4 residues within 4Å:- Chain D: K.73, H.82, T.84, T.182
Ligand excluded by PLIPPG4.21: 7 residues within 4Å:- Chain E: I.146, T.148, R.173, T.176, T.182, T.184
- Ligands: PG4.23
Ligand excluded by PLIPPG4.22: 5 residues within 4Å:- Chain E: G.64, N.65, N.175, T.176, G.178
Ligand excluded by PLIPPG4.23: 4 residues within 4Å:- Chain E: T.84, L.177, T.182
- Ligands: PG4.21
Ligand excluded by PLIPPG4.26: 3 residues within 4Å:- Chain F: K.73, W.218, W.232
Ligand excluded by PLIPPG4.27: 4 residues within 4Å:- Chain F: K.73, H.82, T.84, T.182
Ligand excluded by PLIPPG4.30: 7 residues within 4Å:- Chain G: I.146, T.148, R.173, T.176, T.182, T.184
- Ligands: PG4.32
Ligand excluded by PLIPPG4.31: 5 residues within 4Å:- Chain G: G.64, N.65, N.175, T.176, G.178
Ligand excluded by PLIPPG4.32: 4 residues within 4Å:- Chain G: T.84, L.177, T.182
- Ligands: PG4.30
Ligand excluded by PLIPPG4.35: 3 residues within 4Å:- Chain H: K.73, W.218, W.232
Ligand excluded by PLIPPG4.36: 4 residues within 4Å:- Chain H: K.73, H.82, T.84, T.182
Ligand excluded by PLIPPG4.39: 7 residues within 4Å:- Chain I: I.146, T.148, R.173, T.176, T.182, T.184
- Ligands: PG4.41
Ligand excluded by PLIPPG4.40: 5 residues within 4Å:- Chain I: G.64, N.65, N.175, T.176, G.178
Ligand excluded by PLIPPG4.41: 4 residues within 4Å:- Chain I: T.84, L.177, T.182
- Ligands: PG4.39
Ligand excluded by PLIPPG4.44: 3 residues within 4Å:- Chain J: K.73, W.218, W.232
Ligand excluded by PLIPPG4.45: 4 residues within 4Å:- Chain J: K.73, H.82, T.84, T.182
Ligand excluded by PLIPPG4.48: 7 residues within 4Å:- Chain K: I.146, T.148, R.173, T.176, T.182, T.184
- Ligands: PG4.50
Ligand excluded by PLIPPG4.49: 5 residues within 4Å:- Chain K: G.64, N.65, N.175, T.176, G.178
Ligand excluded by PLIPPG4.50: 4 residues within 4Å:- Chain K: T.84, L.177, T.182
- Ligands: PG4.48
Ligand excluded by PLIPPG4.53: 3 residues within 4Å:- Chain L: K.73, W.218, W.232
Ligand excluded by PLIPPG4.54: 4 residues within 4Å:- Chain L: K.73, H.82, T.84, T.182
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Immormino, R.M. et al., Ligand-induced Conformational Shift in the N-terminal Domain of GRP94, an Hsp90 Chaperone. J.Biol.Chem. (2004)
- Release Date
- 2004-08-24
- Peptides
- Endoplasmin: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
BI
AJ
BK
AL
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 30 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Immormino, R.M. et al., Ligand-induced Conformational Shift in the N-terminal Domain of GRP94, an Hsp90 Chaperone. J.Biol.Chem. (2004)
- Release Date
- 2004-08-24
- Peptides
- Endoplasmin: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
BI
AJ
BK
AL
B