SMTL ID : 2gqp.1 (1 other biounit)

N-Domain Of Grp94 In Complex With the Novel Ligand N-Propyl Carboxyamido Adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.193, D.198 No protein-ligand interaction detected (PLIP)

1 x PA7: N-PROPYL CARBOXYAMIDO ADENOSINE(Non-covalent)

PA7.2: 11 residues within 4Å: Chain A: N.43, A.47, D.85, M.90, N.98, L.99, I.102, V.133, F.135, Y.136, T.181 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.102, A:Y.136 Hydrogen bonds: A:N.43, A:D.85, A:N.98, A:N.98, A:T.181 Water bridges: A:A.47, A:D.85, A:G.87, A:G.89, A:G.132

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 6 residues within 4Å: Chain A: T.148, R.173, T.176, T.182, T.184 Ligands: PG4.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.173, A:R.173 Water bridges: A:T.184 PG4.4: 5 residues within 4Å: Chain A: K.73, H.82, T.84, W.218 Ligands: PG4.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.73, A:T.84 PG4.5: 6 residues within 4Å: Chain A: G.64, E.67, K.71, N.175, T.176, G.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.71, A:K.71 Water bridges: A:E.66, A:E.67

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.6: 5 residues within 4Å: Chain A: N.19, M.22, K.23, I.26, S.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.23, A:S.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Immormino, R.M. et al., Adensine Scaffold inhibitors of GRP94. To be Published

Release Date

2007-04-03

Peptides

Endoplasmin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoplasmin

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