SMTL ID : 1usq.2 (5 other biounits)

Complex of E. Coli DraE adhesin with Chloramphenicol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.34, D.35 Chain C: T.18, G.19, T.20 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:T.20, A:D.35 Water bridges: C:T.18, C:T.20 SO4.2: 2 residues within 4Å: Chain A: D.99, N.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.100, A:N.100 SO4.6: 5 residues within 4Å: Chain A: T.18, G.19, T.20 Chain B: G.34, D.35 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.20, B:D.35 Water bridges: A:T.18, A:T.20 SO4.7: 2 residues within 4Å: Chain B: D.99, N.100 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.100, B:N.100 SO4.11: 5 residues within 4Å: Chain B: T.18, G.19, T.20 Chain C: G.34, D.35 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:T.20, C:D.35 Water bridges: B:T.18, B:T.20 SO4.12: 2 residues within 4Å: Chain C: D.99, N.100 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.100, C:N.100

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 10 residues within 4Å: Chain A: P.14, S.15, G.16, T.143 Chain B: T.24, V.25, T.26, P.135, G.136, N.137 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.16, B:V.25 EDO.4: 6 residues within 4Å: Chain A: S.84, N.86, D.89, P.134, P.135, Y.138 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.84, A:S.84, A:N.86 Water bridges: A:N.86 EDO.8: 10 residues within 4Å: Chain B: P.14, S.15, G.16, T.143 Chain C: T.24, V.25, T.26, P.135, G.136, N.137 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:G.16, C:V.25 EDO.9: 6 residues within 4Å: Chain B: S.84, N.86, D.89, P.134, P.135, Y.138 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.84, B:S.84, B:N.86 Water bridges: B:N.86 EDO.13: 10 residues within 4Å: Chain A: T.24, V.25, T.26, P.135, G.136, N.137 Chain C: P.14, S.15, G.16, T.143 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:V.25, C:G.16 EDO.14: 6 residues within 4Å: Chain C: S.84, N.86, D.89, P.134, P.135, Y.138 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.84, C:S.84, C:N.86 Water bridges: C:N.86

3 x CLM: CHLORAMPHENICOL(Non-covalent)

CLM.5: 7 residues within 4Å: Chain A: P.50, G.52, P.53, I.121, G.123, I.124, Y.125 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.53 Water bridges: A:Y.125 Halogen bonds: A:I.124 CLM.10: 7 residues within 4Å: Chain B: P.50, G.52, P.53, I.121, G.123, I.124, Y.125 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.53 Water bridges: B:Y.125 Halogen bonds: B:I.124 CLM.15: 7 residues within 4Å: Chain C: P.50, G.52, P.53, I.121, G.123, I.124, Y.125 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:P.53 Water bridges: C:Y.125 Halogen bonds: C:I.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pettigrew, D. et al., High Resolution Studies of the Afa/Dr Adhesin Drae and its Interaction with Chloramphenicol. J.Biol.Chem. (2004)

Release Date

2004-08-31

Peptides

DR HEMAGGLUTININ STRUCTURAL SUBUNIT: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

DR HEMAGGLUTININ STRUCTURAL SUBUNIT

Related Entries With Identical Sequence