SMTL ID : 2jkj.2 (5 other biounits)

DraE Adhesin in complex with Chloramphenicol Succinate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.34, D.35 Chain C: T.18, G.19, T.20 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:T.20, A:D.35, A:D.35, A:D.35 SO4.2: 1 residues within 4Å: Chain A: D.99 No protein-ligand interaction detected (PLIP) SO4.5: 5 residues within 4Å: Chain A: E.27, K.28, T.41, R.42, G.43 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.28, A:G.43 SO4.6: 5 residues within 4Å: Chain A: T.18, G.19, T.20 Chain B: G.34, D.35 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:T.20, B:D.35, B:D.35, B:D.35 SO4.7: 1 residues within 4Å: Chain B: D.99 No protein-ligand interaction detected (PLIP) SO4.10: 5 residues within 4Å: Chain B: E.27, K.28, T.41, R.42, G.43 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.28, B:G.43 SO4.11: 5 residues within 4Å: Chain B: T.18, G.19, T.20 Chain C: G.34, D.35 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:D.35, C:D.35, C:D.35, B:T.20 SO4.12: 1 residues within 4Å: Chain C: D.99 No protein-ligand interaction detected (PLIP) SO4.15: 5 residues within 4Å: Chain C: E.27, K.28, T.41, R.42, G.43 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.28, C:G.43

3 x CLM: CHLORAMPHENICOL(Non-covalent)

CLM.3: 8 residues within 4Å: Chain A: P.50, I.51, G.52, P.53, I.121, G.123, I.124, Y.125 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.53 Water bridges: A:Y.125, A:Y.125 Halogen bonds: A:I.124 CLM.8: 8 residues within 4Å: Chain B: P.50, I.51, G.52, P.53, I.121, G.123, I.124, Y.125 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:P.53 Water bridges: B:Y.125, B:Y.125 Halogen bonds: B:I.124 CLM.13: 8 residues within 4Å: Chain C: P.50, I.51, G.52, P.53, I.121, G.123, I.124, Y.125 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:P.53 Water bridges: C:Y.125, C:Y.125 Halogen bonds: C:I.124

3 x TH8: THIAMPHENICOL

TH8.4: 3 residues within 4Å: Chain A: G.43, Q.44, T.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.43, A:T.46, A:T.46 TH8.9: 3 residues within 4Å: Chain B: G.43, Q.44, T.46 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.43, B:T.46, B:T.46 TH8.14: 3 residues within 4Å: Chain C: G.43, Q.44, T.46 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.43, C:T.46, C:T.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pettigrew, D.M. et al., A Structural Study of the Interaction between the Dr Haemagglutinin Drae and Derivatives of Chloramphenicol. Acta Crystallogr.,Sect.D (2009)

Release Date

2008-12-16

Peptides

DR HEMAGGLUTININ STRUCTURAL SUBUNIT: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

DR HEMAGGLUTININ STRUCTURAL SUBUNIT

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