SMTL ID : 2jkl.2 (5 other biounits)

DRAE ADHESIN IN COMPLEX WITH BROMAMPHENICOL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.34, D.35 Chain C: T.18, G.19, T.20 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:T.20, A:D.35 Water bridges: C:T.18, C:T.20, C:T.20 SO4.2: 2 residues within 4Å: Chain A: D.99, N.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.100, A:N.100 SO4.7: 5 residues within 4Å: Chain A: T.18, G.19, T.20 Chain B: G.34, D.35 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.20, B:D.35 Water bridges: A:T.18, A:T.20, A:T.20 SO4.8: 2 residues within 4Å: Chain B: D.99, N.100 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.100, B:N.100 SO4.13: 5 residues within 4Å: Chain B: T.18, G.19, T.20 Chain C: G.34, D.35 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:T.20, C:D.35 Water bridges: B:T.18, B:T.20, B:T.20 SO4.14: 2 residues within 4Å: Chain C: D.99, N.100 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.100, C:N.100

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain A: P.14, S.15, G.16, T.143 Chain B: T.24, V.25, T.26, P.135, G.136 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:V.25, B:G.136, A:G.16 Water bridges: A:T.18, A:T.18 EDO.9: 9 residues within 4Å: Chain B: P.14, S.15, G.16, T.143 Chain C: T.24, V.25, T.26, P.135, G.136 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:G.16, C:V.25, C:G.136 Water bridges: B:T.18, B:T.18 EDO.15: 9 residues within 4Å: Chain A: T.24, V.25, T.26, P.135, G.136 Chain C: P.14, S.15, G.16, T.143 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:G.16, A:V.25, A:G.136 Water bridges: C:T.18, A:N.137

6 x BRX: BROMAMPHENICOL

BRX.4: 4 residues within 4Å: Chain A: G.43, Q.44, T.46, Q.129 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.43, A:T.46 Water bridges: A:Q.44, A:T.46 BRX.5: 9 residues within 4Å: Chain A: P.50, G.52, P.53, T.98, I.121, G.123, I.124, Y.125 Ligands: CLM.6 1 PLIP interactions: 1 interactions with chain A Halogen bonds: A:I.124 BRX.10: 4 residues within 4Å: Chain B: G.43, Q.44, T.46, Q.129 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.43, B:T.46 Water bridges: B:Q.44, B:T.46 BRX.11: 9 residues within 4Å: Chain B: P.50, G.52, P.53, T.98, I.121, G.123, I.124, Y.125 Ligands: CLM.12 1 PLIP interactions: 1 interactions with chain B Halogen bonds: B:I.124 BRX.16: 4 residues within 4Å: Chain C: G.43, Q.44, T.46, Q.129 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.43, C:T.46 Water bridges: C:Q.44, C:T.46 BRX.17: 9 residues within 4Å: Chain C: P.50, G.52, P.53, T.98, I.121, G.123, I.124, Y.125 Ligands: CLM.18 1 PLIP interactions: 1 interactions with chain C Halogen bonds: C:I.124

3 x CLM: CHLORAMPHENICOL(Non-covalent)

CLM.6: 8 residues within 4Å: Chain A: P.50, G.52, P.53, I.121, G.123, I.124, Y.125 Ligands: BRX.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.53 Halogen bonds: A:I.124 CLM.12: 8 residues within 4Å: Chain B: P.50, G.52, P.53, I.121, G.123, I.124, Y.125 Ligands: BRX.11 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.53 Halogen bonds: B:I.124 CLM.18: 8 residues within 4Å: Chain C: P.50, G.52, P.53, I.121, G.123, I.124, Y.125 Ligands: BRX.17 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:P.53 Halogen bonds: C:I.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pettigrew, D.M. et al., A Structural Study of the Interaction between the Dr Haemagglutinin Drae and Derivatives of Chloramphenicol. Acta Crystallogr.,Sect.D (2009)

Release Date

2008-12-16

Peptides

DR HEMAGGLUTININ STRUCTURAL SUBUNIT: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

DR HEMAGGLUTININ STRUCTURAL SUBUNIT

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