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SMTL ID : 1z4v.2
(1 other biounit)
Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) with ligand DANA (soaked with DANA, pH 7.0)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
homo-dimer
Ligands
4 x
NAG
-
NAG
:
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
(Post Translational Modification)
NAG-NAG.1:
4 residues within 4Å:
Chain A:
Y.232
,
N.234
,
T.236
,
Q.336
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:Q.336
NAG-NAG.2:
6 residues within 4Å:
Chain A:
E.448
,
N.471
,
N.472
,
T.473
,
Q.474
,
I.476
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:Q.474
NAG-NAG.6:
4 residues within 4Å:
Chain B:
Y.232
,
N.234
,
T.236
,
Q.336
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:Q.336
NAG-NAG.7:
6 residues within 4Å:
Chain B:
E.448
,
N.471
,
N.472
,
T.473
,
Q.474
,
I.476
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:Q.474
2 x
NAG
:
2-acetamido-2-deoxy-beta-D-glucopyranose
(Post Translational Modification)
NAG.3:
2 residues within 4Å:
Chain A:
N.106
,
L.531
No protein-ligand interaction detected (PLIP)
NAG.8:
2 residues within 4Å:
Chain B:
N.106
,
L.531
No protein-ligand interaction detected (PLIP)
2 x
CA
:
CALCIUM ION
(Non-covalent)
CA.4:
5 residues within 4Å:
Chain A:
D.217
,
S.220
,
A.222
,
P.223
,
A.252
5
PLIP interactions
:
5 interactions with chain A
Metal complexes:
A:D.217
,
A:S.220
,
A:S.220
,
A:A.222
,
A:A.252
CA.9:
5 residues within 4Å:
Chain B:
D.217
,
S.220
,
A.222
,
P.223
,
A.252
5
PLIP interactions
:
5 interactions with chain B
Metal complexes:
B:D.217
,
B:S.220
,
B:S.220
,
B:A.222
,
B:A.252
2 x
DAN
:
2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID
(Non-covalent)
DAN.5:
12 residues within 4Å:
Chain A:
R.130
,
I.131
,
F.208
,
E.214
,
N.255
,
Y.273
,
F.320
,
E.357
,
R.372
,
N.374
,
R.462
,
Y.490
18
PLIP interactions
:
18 interactions with chain A
Hydrophobic interactions:
A:I.131
,
A:F.208
Hydrogen bonds:
A:Y.273
,
A:Y.273
,
A:E.357
,
A:R.372
,
A:Y.490
Water bridges:
A:E.214
,
A:E.214
,
A:E.214
,
A:Y.218
,
A:E.357
,
A:R.372
,
A:R.372
,
A:N.374
Salt bridges:
A:R.130
,
A:R.372
,
A:R.462
DAN.10:
12 residues within 4Å:
Chain B:
R.130
,
I.131
,
F.208
,
E.214
,
N.255
,
Y.273
,
F.320
,
E.357
,
R.372
,
N.374
,
R.462
,
Y.490
18
PLIP interactions
:
18 interactions with chain B
Hydrophobic interactions:
B:I.131
,
B:F.208
Hydrogen bonds:
B:Y.273
,
B:Y.273
,
B:E.357
,
B:R.372
Water bridges:
B:E.214
,
B:E.214
,
B:E.214
,
B:Y.218
,
B:E.357
,
B:E.357
,
B:R.372
,
B:R.372
,
B:N.374
Salt bridges:
B:R.130
,
B:R.372
,
B:R.462
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Yuan, P. et al., Structural studies of the parainfluenza virus 5 hemagglutinin-neuraminidase tetramer in complex with its receptor, sialyllactose. Structure (2005)
Release Date
2005-05-24
Peptides
Hemagglutinin-neuraminidase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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Hemagglutinin-neuraminidase
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