SMTL ID : 1z4x.2 (1 other biounit)

Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) with ligand Sialyllactose (soaked with Sialyllactose, pH8.0)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: Y.232, N.234, T.236, Q.336 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.336 NAG-NAG.2: 5 residues within 4Å: Chain A: E.448, N.471, T.473, Q.474, I.476 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.474 NAG-NAG.6: 4 residues within 4Å: Chain B: Y.232, N.234, T.236, Q.336 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.336 Water bridges: B:Y.232 NAG-NAG.7: 5 residues within 4Å: Chain B: E.448, N.471, T.473, Q.474, I.476 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.474

2 x GLC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose(Post Translational Modification)

GLC-GAL-SIA.3: 12 residues within 4Å: Chain A: R.130, E.214, N.255, Y.273, W.319, F.320, E.357, R.372, N.374, L.426, R.462, Y.490 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.214, A:E.214, A:Y.273, A:Y.273, A:E.357, A:R.372, A:R.372, A:Y.490 Water bridges: A:R.372, A:L.426, A:E.214, A:Y.218, A:E.357, A:N.374 Salt bridges: A:R.130, A:R.372, A:R.462 GLC-GAL-SIA.8: 12 residues within 4Å: Chain B: R.130, E.214, N.255, Y.273, W.319, F.320, E.357, R.372, N.374, L.426, R.462, Y.490 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:E.214, B:E.214, B:Y.273, B:Y.273, B:E.357, B:R.372, B:R.372 Water bridges: B:R.372, B:L.426, B:E.214, B:Y.218, B:E.357, B:E.357, B:E.357, B:N.374 Salt bridges: B:R.130, B:R.372, B:R.462

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.106 NAG.9: 1 residues within 4Å: Chain B: N.106 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.106

2 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain A: D.217, S.220, A.222, P.223, A.252 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.217, A:S.220, A:S.220, A:A.222, A:A.252 CA.10: 5 residues within 4Å: Chain B: D.217, S.220, A.222, P.223, A.252 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.217, B:S.220, B:S.220, B:A.222, B:A.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, P. et al., Structural studies of the parainfluenza virus 5 hemagglutinin-neuraminidase tetramer in complex with its receptor, sialyllactose. Structure (2005)

Release Date

2005-05-24

Peptides

Hemagglutinin-neuraminidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hemagglutinin-neuraminidase

Related Entries With Identical Sequence