- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 2 residues within 4Å:- Chain A: N.106, L.531
No protein-ligand interaction detected (PLIP)NAG.8: 2 residues within 4Å:- Chain B: N.106, L.531
No protein-ligand interaction detected (PLIP)NAG.13: 2 residues within 4Å:- Chain C: N.106, L.531
No protein-ligand interaction detected (PLIP)NAG.18: 2 residues within 4Å:- Chain D: N.106, L.531
No protein-ligand interaction detected (PLIP)- 4 x CA: CALCIUM ION(Non-covalent)
CA.4: 5 residues within 4Å:- Chain A: D.217, S.220, A.222, P.223, A.252
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.217, A:S.220, A:S.220, A:A.222, A:A.252
CA.9: 5 residues within 4Å:- Chain B: D.217, S.220, A.222, P.223, A.252
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.217, B:S.220, B:S.220, B:A.222, B:A.252
CA.14: 5 residues within 4Å:- Chain C: D.217, S.220, A.222, P.223, A.252
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.217, C:S.220, C:S.220, C:A.222, C:A.252
CA.19: 5 residues within 4Å:- Chain D: D.217, S.220, A.222, P.223, A.252
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.217, D:S.220, D:S.220, D:A.222, D:A.252
- 4 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)
DAN.5: 12 residues within 4Å:- Chain A: R.130, I.131, F.208, E.214, N.255, Y.273, F.320, E.357, R.372, N.374, R.462, Y.490
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:F.208
- Hydrogen bonds: A:Y.273, A:Y.273, A:E.357, A:R.372, A:Y.490
- Water bridges: A:Y.218, A:N.374
- Salt bridges: A:R.130, A:R.372, A:R.462
DAN.10: 12 residues within 4Å:- Chain B: R.130, I.131, F.208, E.214, N.255, Y.273, F.320, E.357, R.372, N.374, R.462, Y.490
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:F.208
- Hydrogen bonds: B:Y.273, B:Y.273, B:E.357, B:R.372, B:Y.490
- Water bridges: B:Y.218, B:N.374
- Salt bridges: B:R.130, B:R.372, B:R.462
DAN.15: 12 residues within 4Å:- Chain C: R.130, I.131, F.208, E.214, N.255, Y.273, F.320, E.357, R.372, N.374, R.462, Y.490
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:F.208
- Hydrogen bonds: C:Y.273, C:Y.273, C:E.357, C:R.372
- Water bridges: C:Y.218, C:E.357, C:N.374
- Salt bridges: C:R.130, C:R.372, C:R.462
DAN.20: 12 residues within 4Å:- Chain D: R.130, I.131, F.208, E.214, N.255, Y.273, F.320, E.357, R.372, N.374, R.462, Y.490
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:F.208
- Hydrogen bonds: D:Y.273, D:Y.273, D:E.357, D:R.372
- Water bridges: D:Y.218, D:E.357, D:N.374
- Salt bridges: D:R.130, D:R.372, D:R.462
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yuan, P. et al., Structural studies of the parainfluenza virus 5 hemagglutinin-neuraminidase tetramer in complex with its receptor, sialyllactose. Structure (2005)
- Release Date
- 2005-05-24
- Peptides
- Hemagglutinin-neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yuan, P. et al., Structural studies of the parainfluenza virus 5 hemagglutinin-neuraminidase tetramer in complex with its receptor, sialyllactose. Structure (2005)
- Release Date
- 2005-05-24
- Peptides
- Hemagglutinin-neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A