SMTL ID : 1z4z.2 (1 other biounit)

Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) with ligand DANA(soaked with sialic acid, pH7.0))

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: Y.232, N.234, T.236, Q.336 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.336 NAG-NAG.2: 6 residues within 4Å: Chain A: E.448, N.471, N.472, T.473, Q.474, I.476 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.474 NAG-NAG.6: 4 residues within 4Å: Chain B: Y.232, N.234, T.236, Q.336 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.336 Water bridges: B:Y.232 NAG-NAG.7: 6 residues within 4Å: Chain B: E.448, N.471, N.472, T.473, Q.474, I.476 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.474

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.106, L.531 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain B: N.106, L.531 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: D.217, S.220, A.222, P.223, A.252 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.217, A:S.220, A:S.220, A:A.222, A:A.252 CA.9: 5 residues within 4Å: Chain B: D.217, S.220, A.222, P.223, A.252 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.217, B:S.220, B:S.220, B:A.222, B:A.252

2 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)

DAN.5: 11 residues within 4Å: Chain A: R.130, I.131, F.208, E.214, N.255, Y.273, E.357, R.372, N.374, R.462, Y.490 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.131, A:F.208 Hydrogen bonds: A:Y.273, A:Y.273, A:E.357, A:R.372, A:Y.490 Water bridges: A:E.214, A:Y.218, A:N.374 Salt bridges: A:R.130, A:R.372, A:R.462 DAN.10: 11 residues within 4Å: Chain B: R.130, I.131, F.208, E.214, N.255, Y.273, E.357, R.372, N.374, R.462, Y.490 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:I.131, B:F.208 Hydrogen bonds: B:Y.273, B:Y.273, B:E.357, B:R.372 Water bridges: B:E.214, B:E.214, B:Y.218, B:E.357, B:N.374 Salt bridges: B:R.130, B:R.372, B:R.462

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, P. et al., Structural studies of the parainfluenza virus 5 hemagglutinin-neuraminidase tetramer in complex with its receptor, sialyllactose. Structure (2005)

Release Date

2005-05-24

Peptides

Hemagglutinin-neuraminidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hemagglutinin-neuraminidase

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