SMTL ID : 2beh.1

Crystal structure of antithrombin variant S137A/V317C/T401C with plasma latent antithrombin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: M.20, C.95, N.96, K.350 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain B: M.20, N.155, T.157, A.356 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:M.20

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.2: 3 residues within 4Å: Chain A: N.155, E.156, T.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.157

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.192 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.192 NAG.6: 3 residues within 4Å: Chain B: C.21, C.95, N.96 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: S.52, N.55, S.56, P.80, L.81, L.126, N.418, T.419, I.420 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.55, A:P.80, A:N.418, A:I.420

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, D.J. et al., Crystal structure of monomeric native antithrombin reveals a novel reactive center loop conformation. J.Biol.Chem. (2006)

Release Date

2005-11-01

Peptides

Antithrombin-III: A
Antithrombin-III: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
L

Antithrombin-III

Antithrombin-III

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