- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GLU: GLUTAMIC ACID(Non-covalent)
- 15 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.2: 5 residues within 4Å:- Chain A: L.275, G.278, Q.279
- Chain B: P.442, L.490
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:P.442, B:L.490, A:L.275
- Water bridges: A:G.278
MRD.3: 5 residues within 4Å:- Chain A: I.180, E.241, G.244, A.245, V.264
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.180, A:V.264
- Hydrogen bonds: A:E.241, A:A.245
- Water bridges: A:G.244
MRD.6: 4 residues within 4Å:- Chain A: R.151, Y.152, Y.171, L.500
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:R.151, A:Y.152, A:Y.171, A:L.500
- Hydrogen bonds: A:R.151, A:Y.171, A:Y.171
MRD.10: 5 residues within 4Å:- Chain A: P.442, L.490
- Chain B: L.275, G.278, Q.279
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.275, A:P.442, A:L.490
- Water bridges: B:G.278
MRD.13: 5 residues within 4Å:- Chain B: I.180, E.241, G.244, A.245, V.264
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.180, B:V.264
- Hydrogen bonds: B:E.241, B:E.241, B:A.245
- Water bridges: B:G.244
MRD.15: 5 residues within 4Å:- Chain C: L.275, G.278, Q.279
- Chain D: P.442, L.490
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:P.442, D:L.490, C:L.275
- Water bridges: C:G.278
MRD.16: 5 residues within 4Å:- Chain C: I.180, E.241, G.244, A.245, V.264
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:I.180, C:V.264
- Hydrogen bonds: C:E.241, C:A.245
- Water bridges: C:G.244
MRD.19: 4 residues within 4Å:- Chain C: R.151, Y.152, Y.171, L.500
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:R.151, C:Y.152, C:Y.171, C:L.500
- Hydrogen bonds: C:R.151, C:Y.171, C:Y.171
MRD.23: 5 residues within 4Å:- Chain C: P.442, L.490
- Chain D: L.275, G.278, Q.279
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:P.442, C:L.490, D:L.275
- Water bridges: D:G.278
MRD.26: 5 residues within 4Å:- Chain D: I.180, E.241, G.244, A.245, V.264
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:I.180, D:V.264
- Hydrogen bonds: D:E.241, D:E.241, D:A.245
- Water bridges: D:G.244
MRD.28: 5 residues within 4Å:- Chain E: L.275, G.278, Q.279
- Chain F: P.442, L.490
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain E- Hydrophobic interactions: F:P.442, F:L.490, E:L.275
- Water bridges: E:G.278
MRD.29: 5 residues within 4Å:- Chain E: I.180, E.241, G.244, A.245, V.264
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:I.180, E:V.264
- Hydrogen bonds: E:E.241, E:A.245
- Water bridges: E:G.244
MRD.32: 4 residues within 4Å:- Chain E: R.151, Y.152, Y.171, L.500
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:R.151, E:Y.152, E:Y.171, E:L.500
- Hydrogen bonds: E:R.151, E:Y.171, E:Y.171
MRD.36: 5 residues within 4Å:- Chain E: P.442, L.490
- Chain F: L.275, G.278, Q.279
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain E- Hydrophobic interactions: F:L.275, E:P.442, E:L.490
- Water bridges: F:G.278
MRD.39: 5 residues within 4Å:- Chain F: I.180, E.241, G.244, A.245, V.264
6 PLIP interactions:6 interactions with chain F- Hydrophobic interactions: F:I.180, F:V.264
- Hydrogen bonds: F:E.241, F:E.241, F:A.245
- Water bridges: F:G.244
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 4 residues within 4Å:- Chain A: R.36, P.39, W.46, E.221
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.46, A:W.46
- Hydrogen bonds: A:R.36
MPD.5: 6 residues within 4Å:- Chain A: F.6, Y.144, R.147, A.148, L.500
- Chain B: E.158
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.6, A:Y.144, A:R.147, A:A.148, A:L.500
- Water bridges: B:E.158
MPD.7: 4 residues within 4Å:- Chain A: K.371, S.374, Y.375, I.378
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:K.371, A:Y.375, A:I.378
- Hydrogen bonds: A:Y.375, A:Y.375
- Water bridges: A:R.370, A:S.374
MPD.12: 6 residues within 4Å:- Chain A: E.158
- Chain B: F.6, Y.144, R.147, A.148, L.500
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:F.6, B:Y.144, B:R.147, B:A.148, B:L.500
- Hydrogen bonds: A:E.158
- Water bridges: A:E.158
MPD.17: 4 residues within 4Å:- Chain C: R.36, P.39, W.46, E.221
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:W.46, C:W.46
- Hydrogen bonds: C:R.36
MPD.18: 6 residues within 4Å:- Chain C: F.6, Y.144, R.147, A.148, L.500
- Chain D: E.158
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:F.6, C:Y.144, C:R.147, C:A.148, C:L.500
- Water bridges: D:E.158
MPD.20: 4 residues within 4Å:- Chain C: K.371, S.374, Y.375, I.378
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:K.371, C:Y.375, C:I.378
- Hydrogen bonds: C:Y.375, C:Y.375
- Water bridges: C:R.370, C:S.374
MPD.25: 6 residues within 4Å:- Chain C: E.158
- Chain D: F.6, Y.144, R.147, A.148, L.500
7 PLIP interactions:5 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:F.6, D:Y.144, D:R.147, D:A.148, D:L.500
- Hydrogen bonds: C:E.158
- Water bridges: C:E.158
MPD.30: 4 residues within 4Å:- Chain E: R.36, P.39, W.46, E.221
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:W.46, E:W.46
- Hydrogen bonds: E:R.36
MPD.31: 6 residues within 4Å:- Chain E: F.6, Y.144, R.147, A.148, L.500
- Chain F: E.158
6 PLIP interactions:1 interactions with chain F, 5 interactions with chain E- Water bridges: F:E.158
- Hydrophobic interactions: E:F.6, E:Y.144, E:R.147, E:A.148, E:L.500
MPD.33: 4 residues within 4Å:- Chain E: K.371, S.374, Y.375, I.378
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:K.371, E:Y.375, E:I.378
- Hydrogen bonds: E:Y.375, E:Y.375
- Water bridges: E:R.370, E:S.374
MPD.38: 6 residues within 4Å:- Chain E: E.158
- Chain F: F.6, Y.144, R.147, A.148, L.500
7 PLIP interactions:5 interactions with chain F, 2 interactions with chain E- Hydrophobic interactions: F:F.6, F:Y.144, F:R.147, F:A.148, F:L.500
- Hydrogen bonds: E:E.158
- Water bridges: E:E.158
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.8: 5 residues within 4Å:- Chain A: R.461, R.462, F.464, H.465
- Chain B: K.510
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:K.510
- Water bridges: B:K.91
- Salt bridges: B:K.510, A:H.465
- Hydrogen bonds: A:F.464
ACT.11: 6 residues within 4Å:- Chain A: V.172, K.510
- Chain B: R.461, R.462, F.464, H.465
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:V.172, A:K.510
- Salt bridges: A:K.510, B:H.465
ACT.21: 5 residues within 4Å:- Chain C: R.461, R.462, F.464, H.465
- Chain D: K.510
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:F.464
- Salt bridges: C:H.465, D:K.510
- Hydrophobic interactions: D:K.510
- Water bridges: D:K.91
ACT.24: 6 residues within 4Å:- Chain C: V.172, K.510
- Chain D: R.461, R.462, F.464, H.465
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:V.172, C:K.510
- Salt bridges: C:K.510, D:H.465
ACT.34: 5 residues within 4Å:- Chain E: R.461, R.462, F.464, H.465
- Chain F: K.510
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:F.464
- Salt bridges: E:H.465, F:K.510
- Hydrophobic interactions: F:K.510
- Water bridges: F:K.91
ACT.37: 6 residues within 4Å:- Chain E: V.172, K.510
- Chain F: R.461, R.462, F.464, H.465
4 PLIP interactions:1 interactions with chain F, 3 interactions with chain E- Salt bridges: F:H.465, E:K.510
- Hydrophobic interactions: E:V.172, E:K.510
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., Crystal Structure of Thermus Thermophilus Delta(1)- Pyrroline-5-Carboxylate Dehydrogenase. J.Mol.Biol. (2006)
- Release Date
- 2006-03-09
- Peptides
- 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GLU: GLUTAMIC ACID(Non-covalent)
- 15 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., Crystal Structure of Thermus Thermophilus Delta(1)- Pyrroline-5-Carboxylate Dehydrogenase. J.Mol.Biol. (2006)
- Release Date
- 2006-03-09
- Peptides
- 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B