- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x DPR: D-PROLINE(Non-covalent)
DPR.4: 8 residues within 4Å:- Chain A: E.137, F.185, I.189, S.323, T.476, G.477, A.478, F.485
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:I.189, A:F.485, A:F.485
- Hydrogen bonds: A:E.137, A:S.323, A:G.477, A:A.478
- Water bridges: A:S.323
DPR.11: 8 residues within 4Å:- Chain B: E.137, F.185, I.189, S.323, T.476, G.477, A.478, F.485
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:I.189, B:F.485, B:F.485
- Hydrogen bonds: B:E.137, B:S.323, B:G.477, B:A.478
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 7 residues within 4Å:- Chain A: F.6, Y.144, R.147, A.148, L.500
- Chain B: E.158, V.160
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:F.6, A:Y.144, A:R.147, A:L.500, B:V.160
- Water bridges: B:E.158, B:V.160
MPD.6: 6 residues within 4Å:- Chain A: V.311, V.312, Y.315, G.316, L.349, D.359
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.315, A:L.349
- Hydrogen bonds: A:D.359, A:D.359
- Water bridges: A:N.127
MPD.7: 6 residues within 4Å:- Chain A: I.180, E.241, G.244, A.245, V.264, I.268
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.180, A:I.268
- Hydrogen bonds: A:E.241
- Water bridges: A:G.244
MPD.8: 5 residues within 4Å:- Chain A: R.36, Y.38, P.39, W.46, E.221
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.38, A:W.46, A:W.46, A:E.221
- Hydrogen bonds: A:R.36
MPD.9: 6 residues within 4Å:- Chain A: R.151, Y.152, A.156, Y.171, L.500
- Ligands: MPD.14
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:A.156, A:L.500
- Hydrogen bonds: A:Y.171, A:Y.171
MPD.12: 7 residues within 4Å:- Chain A: L.262, P.442, L.490
- Chain B: L.275, G.278, Q.279, T.280
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:L.275, B:T.280, A:L.262, A:P.442, A:L.490
- Hydrogen bonds: B:G.278
MPD.13: 6 residues within 4Å:- Chain A: E.158
- Chain B: F.6, Y.144, R.147, A.148, L.500
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:F.6, B:Y.144, B:A.148, B:L.500
- Water bridges: B:F.6, B:R.151
- Hydrogen bonds: A:E.158
MPD.14: 4 residues within 4Å:- Chain B: R.151, A.156, L.500
- Ligands: MPD.9
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:A.156, B:L.500
MPD.15: 6 residues within 4Å:- Chain B: I.180, E.241, G.244, A.245, V.264, I.268
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:I.180, B:E.241, B:A.245, B:V.264, B:I.268
- Hydrogen bonds: B:E.241, B:A.245
- Water bridges: B:G.244
MPD.16: 3 residues within 4Å:- Chain B: P.353, E.355, E.356
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.356
MPD.17: 7 residues within 4Å:- Chain B: E.308, V.311, V.312, Y.315, G.316, L.349, D.359
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:V.311, B:V.312, B:L.349
- Hydrogen bonds: B:D.359
- Water bridges: B:N.127
MPD.18: 4 residues within 4Å:- Chain B: R.36, Y.38, W.46, E.221
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:Y.38, B:W.46
- Hydrogen bonds: B:R.36, B:E.221, B:E.221
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD. To be Published
- Release Date
- 2007-09-18
- Peptides
- 1-pyrroline-5-carboxylate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x DPR: D-PROLINE(Non-covalent)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD. To be Published
- Release Date
- 2007-09-18
- Peptides
- 1-pyrroline-5-carboxylate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B