- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.2: 4 residues within 4Å:- Chain A: S.55, L.56, E.123, D.211
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.56, A:E.123
NA.10: 4 residues within 4Å:- Chain B: S.55, L.56, E.123, D.211
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:L.56, B:L.56
NA.20: 4 residues within 4Å:- Chain C: S.55, L.56, E.123, D.211
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:L.56, C:D.211
NA.28: 4 residues within 4Å:- Chain D: S.55, L.56, E.123, D.211
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:L.56, D:D.211
NA.38: 4 residues within 4Å:- Chain E: S.55, L.56, E.123, D.211
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:L.56, E:D.211
NA.46: 4 residues within 4Å:- Chain F: S.55, L.56, E.123, D.211
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:L.56, F:D.211
- 6 x DPR: D-PROLINE(Non-covalent)
DPR.4: 8 residues within 4Å:- Chain A: E.137, F.185, I.189, S.323, T.476, G.477, A.478, F.485
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:I.189, A:F.485, A:F.485
- Hydrogen bonds: A:E.137, A:S.323, A:G.477, A:A.478
- Water bridges: A:S.323
DPR.11: 8 residues within 4Å:- Chain B: E.137, F.185, I.189, S.323, T.476, G.477, A.478, F.485
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:I.189, B:F.485, B:F.485
- Hydrogen bonds: B:E.137, B:S.323, B:G.477, B:A.478
DPR.22: 8 residues within 4Å:- Chain C: E.137, F.185, I.189, S.323, T.476, G.477, A.478, F.485
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:I.189, C:F.485, C:F.485
- Hydrogen bonds: C:E.137, C:S.323, C:G.477, C:A.478
- Water bridges: C:S.323
DPR.29: 8 residues within 4Å:- Chain D: E.137, F.185, I.189, S.323, T.476, G.477, A.478, F.485
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:I.189, D:F.485, D:F.485
- Hydrogen bonds: D:E.137, D:S.323, D:G.477, D:A.478
DPR.40: 8 residues within 4Å:- Chain E: E.137, F.185, I.189, S.323, T.476, G.477, A.478, F.485
8 PLIP interactions:8 interactions with chain E- Hydrophobic interactions: E:I.189, E:F.485, E:F.485
- Hydrogen bonds: E:E.137, E:S.323, E:G.477, E:A.478
- Water bridges: E:S.323
DPR.47: 8 residues within 4Å:- Chain F: E.137, F.185, I.189, S.323, T.476, G.477, A.478, F.485
7 PLIP interactions:7 interactions with chain F- Hydrophobic interactions: F:I.189, F:F.485, F:F.485
- Hydrogen bonds: F:E.137, F:S.323, F:G.477, F:A.478
- 36 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 7 residues within 4Å:- Chain A: F.6, Y.144, R.147, A.148, L.500
- Chain B: E.158, V.160
Ligand excluded by PLIPMPD.6: 6 residues within 4Å:- Chain A: V.311, V.312, Y.315, G.316, L.349, D.359
Ligand excluded by PLIPMPD.7: 6 residues within 4Å:- Chain A: I.180, E.241, G.244, A.245, V.264, I.268
Ligand excluded by PLIPMPD.8: 5 residues within 4Å:- Chain A: R.36, Y.38, P.39, W.46, E.221
Ligand excluded by PLIPMPD.9: 6 residues within 4Å:- Chain A: R.151, Y.152, A.156, Y.171, L.500
- Ligands: MPD.14
Ligand excluded by PLIPMPD.12: 7 residues within 4Å:- Chain A: L.262, P.442, L.490
- Chain B: L.275, G.278, Q.279, T.280
Ligand excluded by PLIPMPD.13: 6 residues within 4Å:- Chain A: E.158
- Chain B: F.6, Y.144, R.147, A.148, L.500
Ligand excluded by PLIPMPD.14: 4 residues within 4Å:- Chain B: R.151, A.156, L.500
- Ligands: MPD.9
Ligand excluded by PLIPMPD.15: 6 residues within 4Å:- Chain B: I.180, E.241, G.244, A.245, V.264, I.268
Ligand excluded by PLIPMPD.16: 3 residues within 4Å:- Chain B: P.353, E.355, E.356
Ligand excluded by PLIPMPD.17: 7 residues within 4Å:- Chain B: E.308, V.311, V.312, Y.315, G.316, L.349, D.359
Ligand excluded by PLIPMPD.18: 4 residues within 4Å:- Chain B: R.36, Y.38, W.46, E.221
Ligand excluded by PLIPMPD.23: 7 residues within 4Å:- Chain C: F.6, Y.144, R.147, A.148, L.500
- Chain D: E.158, V.160
Ligand excluded by PLIPMPD.24: 6 residues within 4Å:- Chain C: V.311, V.312, Y.315, G.316, L.349, D.359
Ligand excluded by PLIPMPD.25: 6 residues within 4Å:- Chain C: I.180, E.241, G.244, A.245, V.264, I.268
Ligand excluded by PLIPMPD.26: 5 residues within 4Å:- Chain C: R.36, Y.38, P.39, W.46, E.221
Ligand excluded by PLIPMPD.27: 6 residues within 4Å:- Chain C: R.151, Y.152, A.156, Y.171, L.500
- Ligands: MPD.32
Ligand excluded by PLIPMPD.30: 7 residues within 4Å:- Chain C: L.262, P.442, L.490
- Chain D: L.275, G.278, Q.279, T.280
Ligand excluded by PLIPMPD.31: 6 residues within 4Å:- Chain C: E.158
- Chain D: F.6, Y.144, R.147, A.148, L.500
Ligand excluded by PLIPMPD.32: 4 residues within 4Å:- Chain D: R.151, A.156, L.500
- Ligands: MPD.27
Ligand excluded by PLIPMPD.33: 6 residues within 4Å:- Chain D: I.180, E.241, G.244, A.245, V.264, I.268
Ligand excluded by PLIPMPD.34: 3 residues within 4Å:- Chain D: P.353, E.355, E.356
Ligand excluded by PLIPMPD.35: 7 residues within 4Å:- Chain D: E.308, V.311, V.312, Y.315, G.316, L.349, D.359
Ligand excluded by PLIPMPD.36: 4 residues within 4Å:- Chain D: R.36, Y.38, W.46, E.221
Ligand excluded by PLIPMPD.41: 7 residues within 4Å:- Chain E: F.6, Y.144, R.147, A.148, L.500
- Chain F: E.158, V.160
Ligand excluded by PLIPMPD.42: 6 residues within 4Å:- Chain E: V.311, V.312, Y.315, G.316, L.349, D.359
Ligand excluded by PLIPMPD.43: 6 residues within 4Å:- Chain E: I.180, E.241, G.244, A.245, V.264, I.268
Ligand excluded by PLIPMPD.44: 5 residues within 4Å:- Chain E: R.36, Y.38, P.39, W.46, E.221
Ligand excluded by PLIPMPD.45: 6 residues within 4Å:- Chain E: R.151, Y.152, A.156, Y.171, L.500
- Ligands: MPD.50
Ligand excluded by PLIPMPD.48: 7 residues within 4Å:- Chain E: L.262, P.442, L.490
- Chain F: L.275, G.278, Q.279, T.280
Ligand excluded by PLIPMPD.49: 6 residues within 4Å:- Chain E: E.158
- Chain F: F.6, Y.144, R.147, A.148, L.500
Ligand excluded by PLIPMPD.50: 4 residues within 4Å:- Chain F: R.151, A.156, L.500
- Ligands: MPD.45
Ligand excluded by PLIPMPD.51: 6 residues within 4Å:- Chain F: I.180, E.241, G.244, A.245, V.264, I.268
Ligand excluded by PLIPMPD.52: 3 residues within 4Å:- Chain F: P.353, E.355, E.356
Ligand excluded by PLIPMPD.53: 7 residues within 4Å:- Chain F: E.308, V.311, V.312, Y.315, G.316, L.349, D.359
Ligand excluded by PLIPMPD.54: 4 residues within 4Å:- Chain F: R.36, Y.38, W.46, E.221
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD. To be Published
- Release Date
- 2007-09-18
- Peptides
- 1-pyrroline-5-carboxylate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 6 x DPR: D-PROLINE(Non-covalent)
- 36 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD. To be Published
- Release Date
- 2007-09-18
- Peptides
- 1-pyrroline-5-carboxylate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B