- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.4: 31 residues within 4Å:- Chain A: I.180, A.181, P.182, W.183, N.184, I.189, K.207, P.208, A.209, E.210, G.238, V.239, G.240, E.241, G.244, A.245, F.258, T.259, G.260, S.261, V.264, I.268, E.288, T.289, G.290, C.322, E.417, F.419, L.445, F.485
- Ligands: ACT.1
25 PLIP interactions:25 interactions with chain A- Hydrophobic interactions: A:P.182, A:I.189, A:T.259
- Hydrogen bonds: A:A.181, A:A.181, A:W.183, A:K.207, A:E.210, A:E.210, A:G.238, A:G.240, A:S.261, A:T.289, A:E.417
- Water bridges: A:W.183, A:W.183, A:W.183, A:D.211, A:E.241, A:E.241, A:G.290, A:Q.368, A:E.417, A:E.417
- Salt bridges: A:K.207
NAP.11: 31 residues within 4Å:- Chain B: I.180, A.181, P.182, W.183, N.184, I.189, K.207, P.208, A.209, E.210, G.238, V.239, G.240, E.241, G.244, A.245, F.258, T.259, G.260, S.261, V.264, I.268, E.288, T.289, G.290, C.322, E.417, F.419, L.445, F.485
- Ligands: ACT.8
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:I.189, B:T.259
- Hydrogen bonds: B:A.181, B:A.181, B:W.183, B:K.207, B:E.210, B:G.238, B:G.240, B:S.261, B:T.289, B:E.417
- Water bridges: B:W.183, B:D.211, B:E.241, B:E.241, B:E.288, B:E.288, B:G.290, B:Q.368, B:E.417
- Salt bridges: B:K.207
- 7 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 6 residues within 4Å:- Chain A: L.275, G.278, Q.279, T.280
- Chain B: P.442, L.490
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:L.275, A:T.280, B:P.442, B:L.490
- Hydrogen bonds: A:G.278
MPD.6: 5 residues within 4Å:- Chain A: R.151, Y.152, Y.171, L.500
- Ligands: MPD.12
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:R.151, A:Y.152, A:Y.152, A:L.500
- Hydrogen bonds: A:R.151, A:Y.171, A:Y.171
MPD.7: 3 residues within 4Å:- Chain A: E.308, V.312, D.359
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.312, A:D.359
- Hydrogen bonds: A:D.359
- Water bridges: A:E.130, A:V.312
MPD.12: 6 residues within 4Å:- Chain B: R.151, Y.152, A.156, Y.171, L.500
- Ligands: MPD.6
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:R.151, B:A.156, B:Y.171, B:L.500
- Water bridges: B:Y.152, A:D.501, A:D.501
MPD.13: 7 residues within 4Å:- Chain A: E.158, V.160
- Chain B: F.6, Y.144, R.147, A.148, L.500
9 PLIP interactions:6 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:F.6, B:Y.144, B:Y.144, B:R.147, B:A.148, B:L.500, A:V.160
- Hydrogen bonds: A:E.158, A:E.158
MPD.14: 6 residues within 4Å:- Chain A: P.442, L.490
- Chain B: L.275, G.278, Q.279, T.280
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.275, B:T.280, A:P.442
- Water bridges: B:G.278
MPD.15: 3 residues within 4Å:- Chain B: P.353, E.355, E.356
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., New insights into the binding mode of coenzymes: structure of Thermus thermophilus Delta1-pyrroline-5-carboxylate dehydrogenase complexed with NADP+. Acta Crystallogr.,Sect.F (2007)
- Release Date
- 2007-05-01
- Peptides
- 1-pyrroline-5-carboxylate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 7 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., New insights into the binding mode of coenzymes: structure of Thermus thermophilus Delta1-pyrroline-5-carboxylate dehydrogenase complexed with NADP+. Acta Crystallogr.,Sect.F (2007)
- Release Date
- 2007-05-01
- Peptides
- 1-pyrroline-5-carboxylate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B