SMTL ID : 2bmg.1

Crystal structure of factor Xa in complex with 50

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain B: D.56, N.58, Q.61, E.62, E.63, E.66 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.56, B:N.58, B:Q.61, H2O.4, H2O.4

1 x I1H: 3-[2-(2,4-DICHLOROPHENYL)ETHOXY]-4-METHOXY-N-[(1-PYRIDIN-4-YLPIPERIDIN-4-YL)METHYL]BENZAMIDE(Non-covalent)

I1H.2: 20 residues within 4Å: Chain B: E.83, T.84, Y.85, R.132, E.135, F.162, D.179, A.180, C.181, Q.182, S.185, V.203, S.204, W.205, G.206, G.208, C.209, G.216, I.217, Y.218 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.85, B:Y.85, B:A.180, B:V.203, B:W.205 Hydrogen bonds: B:Q.182, B:G.206 Water bridges: B:G.206 pi-Stacking: B:F.162, B:W.205, B:W.205 Halogen bonds: B:S.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matter, H. et al., Structural Requirements for Factor Xa Inhibition by 3-Oxybenzamides with Neutral P1 Substituents: Combining X-Ray Crystallography, 3D-Qsar and Tailored Scoring Functions. J.Med.Chem. (2005)

Release Date

2006-03-08

Peptides

COAGULATION FACTOR X: A
COAGULATION FACTOR X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COAGULATION FACTOR X

COAGULATION FACTOR X

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