SMTL ID : 2bnm.1

THE STRUCTURE OF HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE FROM S. WEDMORENIS.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.138, E.142, H.180 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.138, A:E.142, A:E.142, A:H.180, H2O.255 ZN.9: 3 residues within 4Å: Chain B: H.138, E.142, H.180 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.138, B:E.142, B:E.142, B:H.180, H2O.530 ZN.18: 3 residues within 4Å: Chain C: H.138, E.142, H.180 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.138, C:E.142, C:E.142, C:H.180, H2O.802 ZN.26: 3 residues within 4Å: Chain D: H.138, E.142, H.180 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.138, D:E.142, D:E.142, D:H.180, H2O.1077

30 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.90, V.121, K.192 Chain C: F.145 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: A.114, P.115, S.116 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: G.137, H.138, A.139 Chain B: Q.21 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: N.99, Y.105, H.138 Chain B: K.23 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain A: V.96, R.97 Chain B: R.19, D.25 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: Q.55, R.58 Ligand excluded by PLIP SO4.8: 1 residues within 4Å: Chain A: R.113 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: H.61 Chain B: D.77, K.112 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain A: Q.21 Chain B: G.137, H.138, A.139, N.197 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: A.114, P.115, S.116 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Chain B: R.113 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain B: K.186 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain A: K.23 Chain B: Y.105, N.135, H.138 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain B: R.90, V.121, K.192 Chain D: F.145 Ligand excluded by PLIP SO4.17: 1 residues within 4Å: Chain B: N.128 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain A: F.145 Chain C: R.90, V.121, K.192 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain C: A.114, P.115, S.116 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain C: G.137, H.138, A.139 Chain D: Q.21 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain C: N.99, Y.105, H.138 Chain D: K.23 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain C: V.96, R.97 Chain D: R.19, D.25 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain C: Q.55, R.58 Ligand excluded by PLIP SO4.25: 1 residues within 4Å: Chain C: R.113 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain C: H.61 Chain D: D.77, K.112 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain C: Q.21 Chain D: G.137, H.138, A.139, N.197 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain D: A.114, P.115, S.116 Ligand excluded by PLIP SO4.30: 1 residues within 4Å: Chain D: R.113 Ligand excluded by PLIP SO4.31: 1 residues within 4Å: Chain D: K.186 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain C: K.23 Chain D: Y.105, N.135, H.138 Ligand excluded by PLIP SO4.33: 4 residues within 4Å: Chain B: F.145 Chain D: R.90, V.121, K.192 Ligand excluded by PLIP SO4.34: 1 residues within 4Å: Chain D: N.128 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mcluskey, K. et al., Structure and Reactivity of Hydroxypropylphosphonic Acid Epoxidase in Fosfomycin Biosynthesis by a Cation- and Flavin-Dependent Mechanism. Proc.Natl.Acad.Sci.USA (2005)

Release Date

2005-10-05

Peptides

EPOXIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

EPOXIDASE

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