SMTL ID : 3sch.1

Co(II)-HppE with R-HPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x TB6: [(2R)-2-hydroxypropyl]phosphonic acid(Non-covalent)

TB6.1: 10 residues within 4Å: Chain A: Y.103, Y.105, N.135, H.138, E.142, L.144, H.180, F.182 Chain B: K.23 Ligands: CO.2 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.144, A:F.182 Hydrogen bonds: A:N.135 Water bridges: B:K.23, B:K.23 TB6.3: 11 residues within 4Å: Chain A: K.23 Chain B: R.97, Y.103, Y.105, N.135, H.138, E.142, L.144, H.180, F.182 Ligands: CO.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.144, B:F.182 Hydrogen bonds: B:R.97, B:N.135 Water bridges: B:N.135 TB6.5: 10 residues within 4Å: Chain C: Y.103, Y.105, N.135, H.138, E.142, L.144, H.180, F.182 Chain D: K.23 Ligands: CO.6 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:L.144, C:F.182 Hydrogen bonds: C:Y.105, C:N.135 Water bridges: D:K.23, D:K.23 TB6.7: 11 residues within 4Å: Chain C: K.23 Chain D: R.97, Y.103, Y.105, N.135, H.138, E.142, L.144, H.180, F.182 Ligands: CO.8 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.144, D:F.182 Hydrogen bonds: D:R.97, D:Y.105, D:N.135 Water bridges: D:N.135

4 x CO: COBALT (II) ION(Non-covalent)

CO.2: 4 residues within 4Å: Chain A: H.138, E.142, H.180 Ligands: TB6.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.138, A:E.142, A:E.142, A:H.180 CO.4: 5 residues within 4Å: Chain B: N.135, H.138, E.142, H.180 Ligands: TB6.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.138, B:E.142, B:H.180 CO.6: 4 residues within 4Å: Chain C: H.138, E.142, H.180 Ligands: TB6.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.138, C:E.142, C:E.142, C:H.180 CO.8: 5 residues within 4Å: Chain D: N.135, H.138, E.142, H.180 Ligands: TB6.7 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.138, D:E.142, D:H.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yun, D. et al., Structural basis of regiospecificity of a mononuclear iron enzyme in antibiotic fosfomycin biosynthesis. J.Am.Chem.Soc. (2011)

Release Date

2011-07-06

Peptides

Epoxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Epoxidase

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