SMTL ID : 3scg.2 (1 other biounit)

Fe(II)-HppE with R-HPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

12 x FE2: FE (II) ION(Non-functional Binders)(Non-covalent)

FE2.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FE2.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FE2.4: 4 residues within 4Å: Chain A: H.138, E.142, H.180 Ligands: TB6.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.138, A:E.142, A:H.180, H2O.1 FE2.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FE2.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FE2.8: 4 residues within 4Å: Chain B: H.138, E.142, H.180 Ligands: TB6.7 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.138, B:E.142, B:H.180, H2O.2 FE2.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FE2.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FE2.12: 4 residues within 4Å: Chain C: H.138, E.142, H.180 Ligands: TB6.11 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.138, C:E.142, C:H.180, H2O.2 FE2.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FE2.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FE2.16: 4 residues within 4Å: Chain D: H.138, E.142, H.180 Ligands: TB6.15 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.138, D:E.142, D:H.180, H2O.3

4 x TB6: [(2R)-2-hydroxypropyl]phosphonic acid(Non-covalent)

TB6.3: 12 residues within 4Å: Chain A: R.97, Y.103, Y.105, N.135, H.138, E.142, L.144, H.180, F.182, L.193 Chain D: K.23 Ligands: FE2.4 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:L.144, A:F.182, A:L.193 Hydrogen bonds: A:R.97, A:R.97, A:N.135, D:K.23 TB6.7: 12 residues within 4Å: Chain B: R.97, Y.103, Y.105, N.135, H.138, E.142, L.144, H.180, F.182, L.193 Chain C: K.23 Ligands: FE2.8 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:L.144, B:F.182, B:L.193 Hydrogen bonds: B:R.97, B:R.97, B:N.135, C:K.23 TB6.11: 12 residues within 4Å: Chain B: K.23 Chain C: R.97, Y.103, Y.105, N.135, H.138, E.142, L.144, H.180, F.182, L.193 Ligands: FE2.12 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:L.144, C:F.182, C:L.193 Hydrogen bonds: C:R.97, C:R.97, C:Y.105, C:N.135, B:K.23 TB6.15: 12 residues within 4Å: Chain A: K.23 Chain D: R.97, Y.103, Y.105, N.135, H.138, E.142, L.144, H.180, F.182, L.193 Ligands: FE2.16 10 PLIP interactions: 9 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:L.144, D:F.182, D:L.193 Hydrogen bonds: D:R.97, D:R.97, D:Y.105, D:N.135, D:E.142, D:H.180, A:K.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yun, D. et al., Structural basis of regiospecificity of a mononuclear iron enzyme in antibiotic fosfomycin biosynthesis. J.Am.Chem.Soc. (2011)

Release Date

2011-07-06

Peptides

Epoxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

C
C

D
C

Epoxidase

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