SMTL ID : 2boh.1

Crystal structure of factor Xa in complex with compound "1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain B: D.56, N.58, Q.61, E.66 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.56, B:N.58, B:Q.61, H2O.4, H2O.4

1 x IIA: 1-{[5-(5-CHLORO-2-THIENYL)ISOXAZOL-3-YL]METHYL}-N-(1-ISOPROPYLPIPERIDIN-4-YL)-1H-INDOLE-2-CARBOXAMIDE(Non-covalent)

IIA.2: 17 residues within 4Å: Chain B: E.83, T.84, Y.85, E.135, F.162, D.179, A.180, C.181, Q.182, S.185, V.203, W.205, G.206, G.208, G.216, I.217, Y.218 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.85, B:E.135, B:F.162, B:A.180 Hydrogen bonds: B:S.185, B:G.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nazare, M. et al., Probing the Subpockets of Factor Xa Reveals Two Binding Modes for Inhibitors Based on a 2-Carboxyindole Scaffold: A Study Combining Structure-Activity Relationship and X-Ray Crystallography. J.Med.Chem. (2005)

Release Date

2006-04-05

Peptides

COAGULATION FACTOR XA: A
COAGULATION FACTOR XA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COAGULATION FACTOR XA

COAGULATION FACTOR XA

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