- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.90 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x MLI: MALONATE ION(Non-functional Binders)
MLI.3: 8 residues within 4Å:- Chain A: R.250, D.251
- Chain C: R.250, R.253, N.307, E.310
- Ligands: MLI.12, MLI.21
11 PLIP interactions:5 interactions with chain C, 3 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: C:N.307, A:D.251, A:R.253
- Water bridges: C:R.253, B:D.251, B:D.251, B:D.251
- Salt bridges: C:R.250, C:R.253, C:R.253, A:R.250
MLI.12: 8 residues within 4Å:- Chain A: R.250, R.253, N.307, E.310
- Chain B: R.250, D.251
- Ligands: MLI.3, MLI.21
12 PLIP interactions:3 interactions with chain C, 5 interactions with chain A, 4 interactions with chain B- Water bridges: C:D.251, C:D.251, C:D.251, A:R.253
- Hydrogen bonds: A:N.307, B:D.251, B:D.251, B:R.253
- Salt bridges: A:R.250, A:R.253, A:R.253, B:R.250
MLI.21: 8 residues within 4Å:- Chain B: R.250, R.253, N.307, E.310
- Chain C: R.250, D.251
- Ligands: MLI.3, MLI.12
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain C- Hydrogen bonds: B:N.307, C:D.251, C:D.251, C:R.253
- Water bridges: B:R.253
- Salt bridges: B:R.250, B:R.253, B:R.253, C:R.250
- 12 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 5 residues within 4Å:- Chain A: T.228, G.229, A.232, H.319, K.321
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.229
- Salt bridges: A:H.319, A:K.321
ACT.5: 4 residues within 4Å:- Chain A: G.225, T.228, A.317, H.319
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:A.317
- Water bridges: A:R.54, A:R.54, A:G.225, A:H.319
- Salt bridges: A:H.319
ACT.8: 8 residues within 4Å:- Chain A: V.243, L.256, H.260, G.261, W.281, A.291, F.292, Y.293
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.243, A:A.291
ACT.9: 7 residues within 4Å:- Chain A: W.265, T.267, G.268, K.269, N.272
- Chain C: D.275, Q.278
9 PLIP interactions:7 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:N.272
- Hydrogen bonds: A:G.268, A:K.269, A:N.272, C:Q.278, C:Q.278
- Water bridges: A:A.266, A:A.266, A:A.266
ACT.13: 5 residues within 4Å:- Chain B: T.228, G.229, A.232, H.319, K.321
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.229
- Salt bridges: B:H.319, B:K.321
ACT.14: 4 residues within 4Å:- Chain B: G.225, T.228, A.317, H.319
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:A.317
- Water bridges: B:R.54, B:R.54, B:G.225, B:H.319
- Salt bridges: B:H.319
ACT.17: 8 residues within 4Å:- Chain B: V.243, L.256, H.260, G.261, W.281, A.291, F.292, Y.293
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:V.243, B:A.291
ACT.18: 7 residues within 4Å:- Chain A: D.275, Q.278
- Chain B: W.265, T.267, G.268, K.269, N.272
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:N.272
- Hydrogen bonds: B:T.267, B:G.268, B:K.269, B:N.272, A:Q.278, A:Q.278
- Water bridges: B:A.266, B:A.266, B:A.266
ACT.22: 5 residues within 4Å:- Chain C: T.228, G.229, A.232, H.319, K.321
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.229
- Salt bridges: C:H.319, C:K.321
ACT.23: 4 residues within 4Å:- Chain C: G.225, T.228, A.317, H.319
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:A.317
- Water bridges: C:R.54, C:R.54, C:G.225, C:H.319
- Salt bridges: C:H.319
ACT.26: 8 residues within 4Å:- Chain C: V.243, L.256, H.260, G.261, W.281, A.291, F.292, Y.293
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:V.243, C:A.291
ACT.27: 7 residues within 4Å:- Chain B: D.275, Q.278
- Chain C: W.265, T.267, G.268, K.269, N.272
10 PLIP interactions:8 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:N.272
- Hydrogen bonds: C:T.267, C:G.268, C:K.269, C:N.272, B:Q.278, B:Q.278
- Water bridges: C:A.266, C:A.266, C:A.266
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 3 residues within 4Å:- Chain A: P.158, R.159, D.160
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.160
- Water bridges: A:R.159, A:R.159, A:K.163
- Salt bridges: A:K.163
SO4.7: 3 residues within 4Å:- Chain A: D.188, E.189, K.194
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:E.189, A:E.189, A:E.189
- Water bridges: A:A.190, A:K.194
- Salt bridges: A:K.194, A:K.208
SO4.15: 3 residues within 4Å:- Chain B: P.158, R.159, D.160
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.160
- Water bridges: B:R.159, B:R.159, B:D.160, B:K.163
- Salt bridges: B:K.163
SO4.16: 3 residues within 4Å:- Chain B: D.188, E.189, K.194
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:E.189, B:E.189, B:E.189
- Water bridges: B:A.190, B:K.194
- Salt bridges: B:K.194, B:K.208
SO4.24: 3 residues within 4Å:- Chain C: P.158, R.159, D.160
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:D.160
- Water bridges: C:R.159, C:R.159, C:D.160, C:K.163
- Salt bridges: C:K.163
SO4.25: 3 residues within 4Å:- Chain C: D.188, E.189, K.194
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:E.189, C:E.189
- Water bridges: C:A.190, C:K.194
- Salt bridges: C:K.194, C:K.208
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antonyuk, S.V. et al., Atomic Resolution Structures of Resting-State, Substrate- and Product-Complexed Cu-Nitrite Reductase Provide Insight Into Catalytic Mechanism. Proc.Natl.Acad.Sci.USA (2005)
- Release Date
- 2005-08-17
- Peptides
- COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.90 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x MLI: MALONATE ION(Non-functional Binders)
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antonyuk, S.V. et al., Atomic Resolution Structures of Resting-State, Substrate- and Product-Complexed Cu-Nitrite Reductase Provide Insight Into Catalytic Mechanism. Proc.Natl.Acad.Sci.USA (2005)
- Release Date
- 2005-08-17
- Peptides
- COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A