SMTL ID : 2euk.1

Crystal Structure of Human Glycolipid Transfer Protein complexed with 24:1 Galactosylceramide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 7 residues within 4Å: Chain A: D.48, N.52, K.55, W.96, Y.207 Ligands: SPH.2, NER.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.48, A:N.52, A:N.52, A:K.55 Water bridges: A:D.48

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.2: 4 residues within 4Å: Chain A: D.48, W.96 Ligands: GAL.1, NER.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.96 Hydrogen bonds: A:D.48

1 x NER: (15E)-TETRACOS-15-ENOIC ACID(Non-covalent)

NER.3: 21 residues within 4Å: Chain A: F.33, F.34, L.37, F.42, I.45, D.48, I.49, W.96, G.100, F.103, I.104, F.107, A.128, L.136, H.140, F.148, A.151, L.152, A.155 Ligands: GAL.1, SPH.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.33, A:F.34, A:F.34, A:L.37, A:F.42, A:I.45, A:I.45, A:I.49, A:F.103, A:F.103, A:F.103, A:I.104, A:F.107, A:F.107, A:F.107, A:A.128, A:L.136, A:L.136, A:F.148, A:A.155

1 x OCT: N-OCTANE(Non-covalent)

OCT.4: 6 residues within 4Å: Chain A: L.24, E.25, P.31, S.50, I.53, T.54 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.24, A:P.31, A:I.53, A:I.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malinina, L. et al., The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure. Plos Biol. (2006)

Release Date

2006-11-14

Peptides

Glycolipid transfer protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycolipid transfer protein

Related Entries With Identical Sequence