SMTL ID : 2evd.1

Crystal structure of human Glycolipid Transfer Protein complexed with 12:0 Lactosylceramide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 8 residues within 4Å: Chain A: D.48, N.52, K.55, L.92, W.96, Y.207 Ligands: SPH.2, DAO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.52, A:N.52, A:N.52, A:K.55, A:K.55 Water bridges: A:A.93

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.2: 5 residues within 4Å: Chain A: D.48, W.96, V.209 Ligands: BGC-GAL.1, DAO.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.96, A:V.209 Hydrogen bonds: A:D.48

1 x DAO: LAURIC ACID(Non-covalent)

DAO.3: 12 residues within 4Å: Chain A: F.42, I.45, D.48, W.96, G.100, F.103, L.136, H.140, F.148, A.151 Ligands: BGC-GAL.1, SPH.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.42, A:I.45, A:I.45, A:F.103, A:F.103, A:L.136, A:L.136, A:A.151

1 x OCT: N-OCTANE(Non-covalent)

OCT.4: 5 residues within 4Å: Chain A: S.28, P.31, S.50, I.53, T.54 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.31, A:I.53, A:I.53

1 x D10: DECANE(Non-covalent)

D10.5: 6 residues within 4Å: Chain A: L.4, F.34, L.37, F.103, I.104, F.107 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.4, A:F.34, A:L.37, A:F.103, A:I.104, A:F.107, A:F.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malinina, L. et al., The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure. Plos Biol. (2006)

Release Date

2006-11-14

Peptides

Glycolipid transfer protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycolipid transfer protein

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