SMTL ID : 2gbg.1 (1 other biounit)

rat DPP-IV with alkynyl cyanopyrrolidine #2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.86, Y.511, W.593, S.594, H.704 Ligands: 1AD.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.511, A:S.594 Salt bridges: A:R.86, A:H.704

1 x 1AD: (1S)-2-[(2S,5R)-2-(AMINOMETHYL)-5-PROP-1-YN-1-YLPYRROLIDIN-1-YL]-1-CYCLOPENTYL-2-OXOETHANAMINE(Covalent)

1AD.2: 12 residues within 4Å: Chain A: E.166, E.167, F.318, Y.511, S.594, Y.595, V.620, Y.626, Y.630, N.674, H.704 Ligands: SO4.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.318, A:Y.511, A:Y.595, A:Y.595, A:V.620, A:Y.626, A:Y.630, A:Y.630 Hydrogen bonds: A:Y.511, A:Y.511, A:Y.595, A:Y.626, A:N.674

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Longenecker, K.L. et al., Crystal Structures of DPP-IV (CD26) from Rat Kidney Exhibit Flexible Accommodation of Peptidase-Selective Inhibitors. Biochemistry (2006)

Release Date

2006-07-04

Peptides

Dipeptidyl peptidase 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl peptidase 4

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