SMTL ID : 2i3z.2 (1 other biounit)

rat DPP-IV with xanthine mimetic inhibitor #7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-hexamer

Ligands

3 x LIR: 2-[(3S)-3-AMINOPIPERIDIN-1-YL]-1-(2-CYANOBENZYL)-5-METHYL-4,6-DIOXO-3,4,5,6-TETRAHYDROPYRROLO[3,4-D]IMIDAZOL-1-IUM(Non-covalent)

LIR.1: 14 residues within 4Å: Chain A: R.86, E.166, E.167, F.318, Y.511, W.593, S.594, Y.595, G.596, V.620, Y.626, Y.630, N.674, V.675 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.318, A:Y.595, A:V.620, A:Y.626, A:Y.630, A:V.675 Hydrogen bonds: A:R.86, A:R.86, A:E.166, A:Y.595, A:G.596, A:Y.626, A:N.674 pi-Stacking: A:Y.511 LIR.2: 14 residues within 4Å: Chain C: R.86, E.166, E.167, F.318, Y.511, W.593, S.594, Y.595, G.596, V.620, Y.626, Y.630, N.674, V.675 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:F.318, C:Y.595, C:V.620, C:Y.626, C:Y.630, C:V.675 Hydrogen bonds: C:R.86, C:R.86, C:E.166, C:E.166, C:Y.595, C:G.596, C:Y.626, C:N.674 pi-Stacking: C:Y.511 LIR.3: 14 residues within 4Å: Chain E: R.86, E.166, E.167, F.318, Y.511, W.593, S.594, Y.595, G.596, V.620, Y.626, Y.630, N.674, V.675 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:F.318, E:Y.595, E:V.620, E:Y.626, E:Y.630, E:V.675 Hydrogen bonds: E:R.86, E:R.86, E:E.166, E:Y.595, E:G.596, E:Y.626, E:N.674 pi-Stacking: E:Y.511

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kurukulasuriya, R. et al., Xanthine mimetics as potent dipeptidyl peptidase IV inhibitors. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-12-12

Peptides

Dipeptidyl peptidase 4 (Dipeptidyl peptidase IV) (DPP IV): ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Dipeptidyl peptidase 4 (Dipeptidyl peptidase IV) (DPP IV)

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