SMTL ID : 2gbi.2 (1 other biounit)

rat DPP-IV with xanthine inhibitor 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-hexamer

Ligands

3 x XIH: 2-({8-[(3R)-3-AMINOPIPERIDIN-1-YL]-1,3-DIMETHYL-2,6-DIOXO-1,2,3,6-TETRAHYDRO-7H-PURIN-7-YL}METHYL)BENZONITRILE(Non-covalent)

XIH.1: 15 residues within 4Å: Chain A: R.86, E.166, E.167, V.510, Y.511, W.593, S.594, Y.595, G.596, V.620, Y.626, Y.630, N.674, V.675, H.704 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.595, A:V.620, A:Y.626, A:Y.626, A:V.675 Hydrogen bonds: A:R.86, A:R.86, A:Y.595, A:G.596, A:Y.626 pi-Stacking: A:Y.511 XIH.2: 15 residues within 4Å: Chain C: R.86, E.166, E.167, V.510, Y.511, W.593, S.594, Y.595, G.596, V.620, Y.626, Y.630, N.674, V.675, H.704 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:Y.595, C:V.620, C:Y.626, C:Y.626, C:V.675 Hydrogen bonds: C:R.86, C:R.86, C:E.166, C:Y.595, C:G.596, C:Y.626 pi-Stacking: C:Y.511 XIH.3: 15 residues within 4Å: Chain E: R.86, E.166, E.167, V.510, Y.511, W.593, S.594, Y.595, G.596, V.620, Y.626, Y.630, N.674, V.675, H.704 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:Y.595, E:V.620, E:Y.626, E:Y.626, E:V.675 Hydrogen bonds: E:R.86, E:R.86, E:Y.595, E:G.596, E:Y.626 pi-Stacking: E:Y.511

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Longenecker, K.L. et al., Crystal Structures of DPP-IV (CD26) from Rat Kidney Exhibit Flexible Accommodation of Peptidase-Selective Inhibitors. Biochemistry (2006)

Release Date

2006-07-04

Peptides

Dipeptidyl peptidase 4: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Dipeptidyl peptidase 4

Related Entries With Identical Sequence