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SMTL ID : 2gbg.2
(1 other biounit)
rat DPP-IV with alkynyl cyanopyrrolidine #2
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 3.00 Å
Oligo State
homo-hexamer
Ligands
3 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.1:
6 residues within 4Å:
Chain A:
R.86
,
Y.511
,
W.593
,
S.594
,
H.704
Ligands:
1AD.2
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:Y.511
,
A:S.594
Salt bridges:
A:R.86
,
A:H.704
SO4.3:
6 residues within 4Å:
Chain C:
R.86
,
Y.511
,
W.593
,
S.594
,
H.704
Ligands:
1AD.4
4
PLIP interactions
:
4 interactions with chain C
Hydrogen bonds:
C:Y.511
,
C:S.594
Salt bridges:
C:R.86
,
C:H.704
SO4.5:
6 residues within 4Å:
Chain E:
R.86
,
Y.511
,
W.593
,
S.594
,
H.704
Ligands:
1AD.6
4
PLIP interactions
:
4 interactions with chain E
Hydrogen bonds:
E:Y.511
,
E:S.594
Salt bridges:
E:R.86
,
E:H.704
3 x
1AD
:
(1S)-2-[(2S,5R)-2-(AMINOMETHYL)-5-PROP-1-YN-1-YLPYRROLIDIN-1-YL]-1-CYCLOPENTYL-2-OXOETHANAMINE
(Covalent)
1AD.2:
12 residues within 4Å:
Chain A:
E.166
,
E.167
,
F.318
,
Y.511
,
S.594
,
Y.595
,
V.620
,
Y.626
,
Y.630
,
N.674
,
H.704
Ligands:
SO4.1
13
PLIP interactions
:
13 interactions with chain A
Hydrophobic interactions:
A:F.318
,
A:Y.511
,
A:Y.595
,
A:Y.595
,
A:V.620
,
A:Y.626
,
A:Y.630
,
A:Y.630
Hydrogen bonds:
A:Y.511
,
A:Y.511
,
A:Y.595
,
A:Y.626
,
A:N.674
1AD.4:
12 residues within 4Å:
Chain C:
E.166
,
E.167
,
F.318
,
Y.511
,
S.594
,
Y.595
,
V.620
,
Y.626
,
Y.630
,
N.674
,
H.704
Ligands:
SO4.3
14
PLIP interactions
:
14 interactions with chain C
Hydrophobic interactions:
C:F.318
,
C:Y.511
,
C:Y.595
,
C:Y.595
,
C:V.620
,
C:Y.626
,
C:Y.630
,
C:Y.630
Hydrogen bonds:
C:E.166
,
C:Y.511
,
C:Y.511
,
C:Y.595
,
C:Y.626
,
C:N.674
1AD.6:
12 residues within 4Å:
Chain E:
E.166
,
E.167
,
F.318
,
Y.511
,
S.594
,
Y.595
,
V.620
,
Y.626
,
Y.630
,
N.674
,
H.704
Ligands:
SO4.5
13
PLIP interactions
:
13 interactions with chain E
Hydrophobic interactions:
E:F.318
,
E:Y.511
,
E:Y.595
,
E:Y.595
,
E:V.620
,
E:Y.626
,
E:Y.630
,
E:Y.630
Hydrogen bonds:
E:Y.511
,
E:Y.511
,
E:Y.595
,
E:Y.626
,
E:N.674
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Longenecker, K.L. et al., Crystal Structures of DPP-IV (CD26) from Rat Kidney Exhibit Flexible Accommodation of Peptidase-Selective Inhibitors. Biochemistry (2006)
Release Date
2006-07-04
Peptides
Dipeptidyl peptidase 4:
A
B
C
D
E
F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
A
D
B
E
A
F
B
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Dipeptidyl peptidase 4
Toggle Identical (ABCDEF)
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|
2gbc.2
|
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|
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|
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|
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|
2gbi.2
|
2i3z.1
|
2i3z.2
|
2oae.1
|
2oae.2
|
4ffv.1
|
4ffw.1
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