- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x PCT: PHOSPHONOACETAMIDE(Non-covalent)
PCT.2: 14 residues within 4Å:- Chain A: A.51, S.52, T.53, R.54, T.55, R.105, H.134, P.266, L.267, P.268
- Chain I: S.80, K.84
- Ligands: ASP.3, ASP.4
9 PLIP interactions:7 interactions with chain A, 1 interactions with chain I, 1 Ligand-Ligand interactions- Hydrogen bonds: A:A.51, A:T.53, A:R.54, A:R.54, A:T.55, A:R.105, A:R.105, I:S.80, D.4
PCT.6: 14 residues within 4Å:- Chain C: A.51, S.52, T.53, R.54, T.55, R.105, H.134, Q.137, P.266, L.267, P.268
- Chain G: S.80, K.84
- Ligands: ASP.7
10 PLIP interactions:9 interactions with chain C, 1 interactions with chain G- Hydrogen bonds: C:A.51, C:S.52, C:T.53, C:R.54, C:R.54, C:T.55, C:T.55, C:R.105, C:Q.137, G:S.80
PCT.10: 14 residues within 4Å:- Chain A: S.80, K.84
- Chain E: A.51, S.52, T.53, R.54, T.55, R.105, H.134, P.266, L.267, P.268
- Ligands: ASP.11, ASP.12
9 PLIP interactions:7 interactions with chain E, 1 Ligand-Ligand interactions, 1 interactions with chain A- Hydrogen bonds: E:A.51, E:T.53, E:R.54, E:R.54, E:T.55, E:R.105, E:R.105, D.12, A:S.80
PCT.14: 14 residues within 4Å:- Chain G: A.51, S.52, T.53, R.54, T.55, R.105, H.134, Q.137, P.266, L.267, P.268
- Chain K: S.80, K.84
- Ligands: ASP.15
10 PLIP interactions:1 interactions with chain K, 9 interactions with chain G- Hydrogen bonds: K:S.80, G:A.51, G:S.52, G:T.53, G:R.54, G:R.54, G:T.55, G:T.55, G:R.105, G:Q.137
PCT.18: 14 residues within 4Å:- Chain E: S.80, K.84
- Chain I: A.51, S.52, T.53, R.54, T.55, R.105, H.134, P.266, L.267, P.268
- Ligands: ASP.19, ASP.20
9 PLIP interactions:7 interactions with chain I, 1 Ligand-Ligand interactions, 1 interactions with chain E- Hydrogen bonds: I:A.51, I:T.53, I:R.54, I:R.54, I:T.55, I:R.105, I:R.105, D.20, E:S.80
PCT.22: 14 residues within 4Å:- Chain C: S.80, K.84
- Chain K: A.51, S.52, T.53, R.54, T.55, R.105, H.134, Q.137, P.266, L.267, P.268
- Ligands: ASP.23
10 PLIP interactions:9 interactions with chain K, 1 interactions with chain C- Hydrogen bonds: K:A.51, K:S.52, K:T.53, K:R.54, K:R.54, K:T.55, K:T.55, K:R.105, K:Q.137, C:S.80
- 9 x ASP: ASPARTIC ACID(Non-covalent)
ASP.3: 10 residues within 4Å:- Chain A: R.105, H.134, R.167, T.168, R.229, Q.231, L.267, P.268
- Chain I: K.84
- Ligands: PCT.2
13 PLIP interactions:7 interactions with chain A, 2 interactions with chain I, 4 Ligand-Ligand interactions- Hydrogen bonds: A:L.267, D.3, D.3, D.3
- Water bridges: A:T.168, A:R.229, D.3
- Salt bridges: A:R.105, A:H.134, A:R.167, A:R.229, I:K.84, I:K.84
ASP.4: 12 residues within 4Å:- Chain A: R.54, T.55, S.58, H.134, Q.137, L.140, P.266, A.289, G.292, R.296
- Chain I: Y.98
- Ligands: PCT.2
10 PLIP interactions:7 interactions with chain A, 3 Ligand-Ligand interactions- Hydrophobic interactions: A:R.54, A:L.140
- Hydrogen bonds: A:S.58, A:Q.137, D.4, D.4, D.4
- Salt bridges: A:H.134, A:R.296, A:R.296
ASP.7: 10 residues within 4Å:- Chain C: R.105, R.167, T.168, R.229, Q.231, P.266, L.267, P.268
- Chain G: K.84
- Ligands: PCT.6
15 PLIP interactions:2 Ligand-Ligand interactions, 10 interactions with chain C, 3 interactions with chain G- Hydrogen bonds: D.7, D.7, C:Q.231, C:Q.231
- Water bridges: C:R.167, C:R.229, C:R.234, C:R.234
- Salt bridges: C:R.105, C:H.134, C:R.167, C:R.229, G:K.84, G:K.84
- Hydrophobic interactions: G:K.84
ASP.11: 10 residues within 4Å:- Chain A: K.84
- Chain E: R.105, H.134, R.167, T.168, R.229, Q.231, L.267, P.268
- Ligands: PCT.10
13 PLIP interactions:2 interactions with chain A, 7 interactions with chain E, 4 Ligand-Ligand interactions- Salt bridges: A:K.84, A:K.84, E:R.105, E:H.134, E:R.167, E:R.229
- Hydrogen bonds: E:L.267, D.11, D.11, D.11
- Water bridges: E:T.168, E:R.229, D.11
ASP.12: 12 residues within 4Å:- Chain A: Y.98
- Chain E: R.54, T.55, S.58, H.134, Q.137, L.140, P.266, A.289, G.292, R.296
- Ligands: PCT.10
10 PLIP interactions:7 interactions with chain E, 3 Ligand-Ligand interactions- Hydrophobic interactions: E:R.54, E:L.140
- Hydrogen bonds: E:S.58, E:Q.137, D.12, D.12, D.12
- Salt bridges: E:H.134, E:R.296, E:R.296
ASP.15: 10 residues within 4Å:- Chain G: R.105, R.167, T.168, R.229, Q.231, P.266, L.267, P.268
- Chain K: K.84
- Ligands: PCT.14
15 PLIP interactions:10 interactions with chain G, 2 Ligand-Ligand interactions, 3 interactions with chain K- Hydrogen bonds: G:Q.231, G:Q.231, D.15, D.15
- Water bridges: G:R.167, G:R.229, G:R.234, G:R.234
- Salt bridges: G:R.105, G:H.134, G:R.167, G:R.229, K:K.84, K:K.84
- Hydrophobic interactions: K:K.84
ASP.19: 10 residues within 4Å:- Chain E: K.84
- Chain I: R.105, H.134, R.167, T.168, R.229, Q.231, L.267, P.268
- Ligands: PCT.18
13 PLIP interactions:7 interactions with chain I, 4 Ligand-Ligand interactions, 2 interactions with chain E- Hydrogen bonds: I:L.267, D.19, D.19, D.19
- Water bridges: I:T.168, I:R.229, D.19
- Salt bridges: I:R.105, I:H.134, I:R.167, I:R.229, E:K.84, E:K.84
ASP.20: 12 residues within 4Å:- Chain E: Y.98
- Chain I: R.54, T.55, S.58, H.134, Q.137, L.140, P.266, A.289, G.292, R.296
- Ligands: PCT.18
10 PLIP interactions:7 interactions with chain I, 3 Ligand-Ligand interactions- Hydrophobic interactions: I:R.54, I:L.140
- Hydrogen bonds: I:S.58, I:Q.137, D.20, D.20, D.20
- Salt bridges: I:H.134, I:R.296, I:R.296
ASP.23: 10 residues within 4Å:- Chain C: K.84
- Chain K: R.105, R.167, T.168, R.229, Q.231, P.266, L.267, P.268
- Ligands: PCT.22
15 PLIP interactions:10 interactions with chain K, 3 interactions with chain C, 2 Ligand-Ligand interactions- Hydrogen bonds: K:Q.231, K:Q.231, D.23, D.23
- Water bridges: K:R.167, K:R.229, K:R.234, K:R.234
- Salt bridges: K:R.105, K:H.134, K:R.167, K:R.229, C:K.84, C:K.84
- Hydrophobic interactions: C:K.84
- 6 x ZN: ZINC ION(Non-covalent)
ZN.5: 4 residues within 4Å:- Chain B: C.109, C.114, C.138, C.141
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:C.109, B:C.114, B:C.138, B:C.141, H2O.6
ZN.8: 4 residues within 4Å:- Chain D: C.109, C.114, C.138, C.141
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.109, D:C.114, D:C.138, D:C.141
ZN.13: 4 residues within 4Å:- Chain F: C.109, C.114, C.138, C.141
5 PLIP interactions:4 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:C.109, F:C.114, F:C.138, F:C.141, H2O.19
ZN.16: 4 residues within 4Å:- Chain H: C.109, C.114, C.138, C.141
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.109, H:C.114, H:C.138, H:C.141
ZN.21: 4 residues within 4Å:- Chain J: C.109, C.114, C.138, C.141
5 PLIP interactions:4 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:C.109, J:C.114, J:C.138, J:C.141, H2O.33
ZN.24: 4 residues within 4Å:- Chain L: C.109, C.114, C.138, C.141
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:C.109, L:C.114, L:C.138, L:C.141
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, J. et al., The allosteric transition induced by the aspartate binding to Aspartate Transcarbamoylase. To be Published
- Release Date
- 2007-07-17
- Peptides
- Aspartate carbamoyltransferase catalytic chain: ACEGIK
Aspartate carbamoyltransferase regulatory chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x PCT: PHOSPHONOACETAMIDE(Non-covalent)
- 9 x ASP: ASPARTIC ACID(Non-covalent)
- 6 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, J. et al., The allosteric transition induced by the aspartate binding to Aspartate Transcarbamoylase. To be Published
- Release Date
- 2007-07-17
- Peptides
- Aspartate carbamoyltransferase catalytic chain: ACEGIK
Aspartate carbamoyltransferase regulatory chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D