- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 6 x PAL: N-(PHOSPHONACETYL)-L-ASPARTIC ACID(Non-covalent)
- 6 x ZN: ZINC ION(Non-covalent)
ZN.2: 4 residues within 4Å:- Chain B: C.109, C.114, C.138, C.141
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.109, B:C.114, B:C.138, B:C.141
ZN.7: 4 residues within 4Å:- Chain D: C.109, C.114, C.138, C.141
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.109, D:C.114, D:C.138, D:C.141
ZN.12: 4 residues within 4Å:- Chain F: C.109, C.114, C.138, C.141
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:C.109, F:C.114, F:C.138, F:C.141
ZN.17: 4 residues within 4Å:- Chain H: C.109, C.114, C.138, C.141
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.109, H:C.114, H:C.138, H:C.141
ZN.22: 4 residues within 4Å:- Chain J: C.109, C.114, C.138, C.141
4 PLIP interactions:4 interactions with chain J- Metal complexes: J:C.109, J:C.114, J:C.138, J:C.141
ZN.27: 4 residues within 4Å:- Chain L: C.109, C.114, C.138, C.141
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:C.109, L:C.114, L:C.138, L:C.141
- 12 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
UTP.3: 13 residues within 4Å:- Chain B: A.11, I.12, V.17, D.19, H.20, K.60, T.82, N.84, Y.89, V.91, K.94
- Ligands: UTP.4, MG.5
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:I.12, B:I.12, B:D.19, B:K.60, B:N.84
- Salt bridges: B:H.20, B:K.94, B:K.94, B:K.94
UTP.4: 12 residues within 4Å:- Chain B: E.10, H.20, L.48, P.49, S.50, E.52, K.56, L.58, K.60
- Chain D: R.41
- Ligands: UTP.3, MG.5
13 PLIP interactions:11 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:E.10, B:S.50, B:E.52, B:K.60, B:K.60, D:R.41, D:R.41
- Water bridges: B:K.56, B:K.56
- Salt bridges: B:H.20, B:K.56, B:K.56, B:K.56
UTP.8: 12 residues within 4Å:- Chain D: A.11, I.12, V.17, H.20, K.60, N.84, Y.89, E.90, V.91, K.94
- Ligands: UTP.9, MG.10
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:V.91
- Hydrogen bonds: D:I.12, D:I.12, D:D.19, D:K.60, D:K.60
- Water bridges: D:H.20, D:K.56
- Salt bridges: D:H.20, D:K.94, D:K.94, D:K.94
UTP.9: 12 residues within 4Å:- Chain B: R.41
- Chain D: H.20, L.48, P.49, S.50, G.51, E.52, K.56, L.58, K.60
- Ligands: UTP.8, MG.10
11 PLIP interactions:10 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:G.51, D:E.52, D:K.60, D:K.60, B:R.41
- Water bridges: D:D.19, D:K.56
- Salt bridges: D:H.20, D:K.56, D:K.56, D:K.56
UTP.13: 13 residues within 4Å:- Chain F: A.11, I.12, V.17, D.19, H.20, K.60, T.82, N.84, Y.89, V.91, K.94
- Ligands: UTP.14, MG.15
9 PLIP interactions:9 interactions with chain F- Hydrogen bonds: F:I.12, F:I.12, F:D.19, F:K.60, F:N.84
- Salt bridges: F:H.20, F:K.94, F:K.94, F:K.94
UTP.14: 12 residues within 4Å:- Chain F: E.10, H.20, L.48, P.49, S.50, E.52, K.56, L.58, K.60
- Chain H: R.41
- Ligands: UTP.13, MG.15
13 PLIP interactions:11 interactions with chain F, 2 interactions with chain H- Hydrogen bonds: F:E.10, F:S.50, F:E.52, F:K.60, F:K.60, H:R.41, H:R.41
- Water bridges: F:K.56, F:K.56
- Salt bridges: F:H.20, F:K.56, F:K.56, F:K.56
UTP.18: 12 residues within 4Å:- Chain H: A.11, I.12, V.17, H.20, K.60, N.84, Y.89, E.90, V.91, K.94
- Ligands: UTP.19, MG.20
12 PLIP interactions:12 interactions with chain H- Hydrophobic interactions: H:V.91
- Hydrogen bonds: H:I.12, H:I.12, H:D.19, H:K.60, H:K.60
- Water bridges: H:H.20, H:K.56
- Salt bridges: H:H.20, H:K.94, H:K.94, H:K.94
UTP.19: 12 residues within 4Å:- Chain F: R.41
- Chain H: H.20, L.48, P.49, S.50, G.51, E.52, K.56, L.58, K.60
- Ligands: UTP.18, MG.20
11 PLIP interactions:10 interactions with chain H, 1 interactions with chain F- Hydrogen bonds: H:G.51, H:E.52, H:K.60, H:K.60, F:R.41
- Water bridges: H:D.19, H:K.56
- Salt bridges: H:H.20, H:K.56, H:K.56, H:K.56
UTP.23: 13 residues within 4Å:- Chain J: A.11, I.12, V.17, D.19, H.20, K.60, T.82, N.84, Y.89, V.91, K.94
- Ligands: UTP.24, MG.25
9 PLIP interactions:9 interactions with chain J- Hydrogen bonds: J:I.12, J:I.12, J:D.19, J:K.60, J:N.84
- Salt bridges: J:H.20, J:K.94, J:K.94, J:K.94
UTP.24: 12 residues within 4Å:- Chain J: E.10, H.20, L.48, P.49, S.50, E.52, K.56, L.58, K.60
- Chain L: R.41
- Ligands: UTP.23, MG.25
13 PLIP interactions:11 interactions with chain J, 2 interactions with chain L- Hydrogen bonds: J:E.10, J:S.50, J:E.52, J:K.60, J:K.60, L:R.41, L:R.41
- Water bridges: J:K.56, J:K.56
- Salt bridges: J:H.20, J:K.56, J:K.56, J:K.56
UTP.28: 12 residues within 4Å:- Chain L: A.11, I.12, V.17, H.20, K.60, N.84, Y.89, E.90, V.91, K.94
- Ligands: UTP.29, MG.30
12 PLIP interactions:12 interactions with chain L- Hydrophobic interactions: L:V.91
- Hydrogen bonds: L:I.12, L:I.12, L:D.19, L:K.60, L:K.60
- Water bridges: L:H.20, L:K.56
- Salt bridges: L:H.20, L:K.94, L:K.94, L:K.94
UTP.29: 12 residues within 4Å:- Chain J: R.41
- Chain L: H.20, L.48, P.49, S.50, G.51, E.52, K.56, L.58, K.60
- Ligands: UTP.28, MG.30
11 PLIP interactions:10 interactions with chain L, 1 interactions with chain J- Hydrogen bonds: L:G.51, L:E.52, L:K.60, L:K.60, J:R.41
- Water bridges: L:D.19, L:K.56
- Salt bridges: L:H.20, L:K.56, L:K.56, L:K.56
- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.5: 3 residues within 4Å:- Chain B: H.20
- Ligands: UTP.3, UTP.4
No protein-ligand interaction detected (PLIP)MG.10: 2 residues within 4Å:- Ligands: UTP.8, UTP.9
No protein-ligand interaction detected (PLIP)MG.15: 3 residues within 4Å:- Chain F: H.20
- Ligands: UTP.13, UTP.14
No protein-ligand interaction detected (PLIP)MG.20: 2 residues within 4Å:- Ligands: UTP.18, UTP.19
No protein-ligand interaction detected (PLIP)MG.25: 3 residues within 4Å:- Chain J: H.20
- Ligands: UTP.23, UTP.24
No protein-ligand interaction detected (PLIP)MG.30: 2 residues within 4Å:- Ligands: UTP.28, UTP.29
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cockrell, G.M. et al., New Paradigm for Allosteric Regulation of Escherichia coli Aspartate Transcarbamoylase. Biochemistry (2013)
- Release Date
- 2013-11-27
- Peptides
- Aspartate carbamoyltransferase: ACEGIK
Aspartate carbamoyltransferase regulatory chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 6 x PAL: N-(PHOSPHONACETYL)-L-ASPARTIC ACID(Non-covalent)
- 6 x ZN: ZINC ION(Non-covalent)
- 12 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cockrell, G.M. et al., New Paradigm for Allosteric Regulation of Escherichia coli Aspartate Transcarbamoylase. Biochemistry (2013)
- Release Date
- 2013-11-27
- Peptides
- Aspartate carbamoyltransferase: ACEGIK
Aspartate carbamoyltransferase regulatory chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D