- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.09 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
UTP.2: 15 residues within 4Å:- Chain B: K.6, L.7, Q.8, V.9, H.20, L.48, P.49, S.50, G.51, E.52, K.56, L.58, K.60
- Ligands: DCP.3, MG.4
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:L.7, B:L.58
- Hydrogen bonds: B:K.6, B:L.7, B:Q.8, B:V.9, B:V.9, B:S.50, B:G.51, B:E.52, B:K.60
- Water bridges: B:D.19, B:K.56
- Salt bridges: B:H.20, B:K.56, B:K.56, B:K.56
UTP.6: 15 residues within 4Å:- Chain D: K.6, L.7, Q.8, V.9, H.20, L.48, P.49, S.50, G.51, E.52, K.56, L.58, K.60
- Ligands: DCP.7, MG.8
17 PLIP interactions:17 interactions with chain D- Hydrophobic interactions: D:L.7, D:L.58
- Hydrogen bonds: D:Q.8, D:V.9, D:V.9, D:S.50, D:G.51, D:E.52, D:K.60
- Water bridges: D:E.52, D:E.52, D:K.56, D:K.56
- Salt bridges: D:H.20, D:K.56, D:K.56, D:K.56
UTP.10: 15 residues within 4Å:- Chain F: K.6, L.7, Q.8, V.9, H.20, L.48, P.49, S.50, G.51, E.52, K.56, L.58, K.60
- Ligands: DCP.11, MG.12
17 PLIP interactions:17 interactions with chain F- Hydrophobic interactions: F:L.7, F:L.58
- Hydrogen bonds: F:K.6, F:L.7, F:Q.8, F:V.9, F:V.9, F:S.50, F:G.51, F:E.52, F:K.60
- Water bridges: F:D.19, F:K.56
- Salt bridges: F:H.20, F:K.56, F:K.56, F:K.56
UTP.14: 15 residues within 4Å:- Chain H: K.6, L.7, Q.8, V.9, H.20, L.48, P.49, S.50, G.51, E.52, K.56, L.58, K.60
- Ligands: DCP.15, MG.16
17 PLIP interactions:17 interactions with chain H- Hydrophobic interactions: H:L.7, H:L.58
- Hydrogen bonds: H:Q.8, H:V.9, H:V.9, H:S.50, H:G.51, H:E.52, H:K.60
- Water bridges: H:E.52, H:E.52, H:K.56, H:K.56
- Salt bridges: H:H.20, H:K.56, H:K.56, H:K.56
UTP.18: 15 residues within 4Å:- Chain J: K.6, L.7, Q.8, V.9, H.20, L.48, P.49, S.50, G.51, E.52, K.56, L.58, K.60
- Ligands: DCP.19, MG.20
17 PLIP interactions:17 interactions with chain J- Hydrophobic interactions: J:L.7, J:L.58
- Hydrogen bonds: J:K.6, J:L.7, J:Q.8, J:V.9, J:V.9, J:S.50, J:G.51, J:E.52, J:K.60
- Water bridges: J:D.19, J:K.56
- Salt bridges: J:H.20, J:K.56, J:K.56, J:K.56
UTP.22: 15 residues within 4Å:- Chain L: K.6, L.7, Q.8, V.9, H.20, L.48, P.49, S.50, G.51, E.52, K.56, L.58, K.60
- Ligands: DCP.23, MG.24
17 PLIP interactions:17 interactions with chain L- Hydrophobic interactions: L:L.7, L:L.58
- Hydrogen bonds: L:Q.8, L:V.9, L:V.9, L:S.50, L:G.51, L:E.52, L:K.60
- Water bridges: L:E.52, L:E.52, L:K.56, L:K.56
- Salt bridges: L:H.20, L:K.56, L:K.56, L:K.56
- 6 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)
DCP.3: 14 residues within 4Å:- Chain B: A.11, I.12, V.17, D.19, H.20, K.60, T.82, N.84, I.86, Y.89, V.91, K.94
- Ligands: UTP.2, MG.4
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:I.86
- Hydrogen bonds: B:I.12, B:K.60, B:Y.89
- Water bridges: B:T.82, B:T.82, B:T.82
- Salt bridges: B:H.20, B:K.94, B:K.94, B:K.94
DCP.7: 14 residues within 4Å:- Chain D: A.11, I.12, V.17, D.19, H.20, K.60, T.82, N.84, I.86, Y.89, V.91, K.94
- Ligands: UTP.6, MG.8
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:I.86
- Hydrogen bonds: D:I.12, D:K.60, D:Y.89
- Water bridges: D:D.19, D:D.19, D:H.20, D:H.20, D:E.52, D:E.52, D:K.56
- Salt bridges: D:H.20, D:K.94, D:K.94, D:K.94
DCP.11: 14 residues within 4Å:- Chain F: A.11, I.12, V.17, D.19, H.20, K.60, T.82, N.84, I.86, Y.89, V.91, K.94
- Ligands: UTP.10, MG.12
11 PLIP interactions:11 interactions with chain F- Hydrophobic interactions: F:I.86
- Hydrogen bonds: F:I.12, F:K.60, F:Y.89
- Water bridges: F:T.82, F:T.82, F:T.82
- Salt bridges: F:H.20, F:K.94, F:K.94, F:K.94
DCP.15: 14 residues within 4Å:- Chain H: A.11, I.12, V.17, D.19, H.20, K.60, T.82, N.84, I.86, Y.89, V.91, K.94
- Ligands: UTP.14, MG.16
16 PLIP interactions:16 interactions with chain H- Hydrophobic interactions: H:I.86
- Hydrogen bonds: H:I.12, H:K.60, H:Y.89
- Water bridges: H:D.19, H:D.19, H:D.19, H:H.20, H:H.20, H:H.20, H:E.52, H:E.52
- Salt bridges: H:H.20, H:K.94, H:K.94, H:K.94
DCP.19: 14 residues within 4Å:- Chain J: A.11, I.12, V.17, D.19, H.20, K.60, T.82, N.84, I.86, Y.89, V.91, K.94
- Ligands: UTP.18, MG.20
11 PLIP interactions:11 interactions with chain J- Hydrophobic interactions: J:I.86
- Hydrogen bonds: J:I.12, J:K.60, J:Y.89
- Water bridges: J:T.82, J:T.82, J:T.82
- Salt bridges: J:H.20, J:K.94, J:K.94, J:K.94
DCP.23: 14 residues within 4Å:- Chain L: A.11, I.12, V.17, D.19, H.20, K.60, T.82, N.84, I.86, Y.89, V.91, K.94
- Ligands: UTP.22, MG.24
15 PLIP interactions:15 interactions with chain L- Hydrophobic interactions: L:I.86
- Hydrogen bonds: L:I.12, L:K.60, L:Y.89
- Water bridges: L:D.19, L:D.19, L:H.20, L:H.20, L:E.52, L:E.52, L:K.56
- Salt bridges: L:H.20, L:K.94, L:K.94, L:K.94
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 3 residues within 4Å:- Chain B: H.20
- Ligands: UTP.2, DCP.3
No protein-ligand interaction detected (PLIP)MG.8: 3 residues within 4Å:- Chain D: H.20
- Ligands: UTP.6, DCP.7
No protein-ligand interaction detected (PLIP)MG.12: 3 residues within 4Å:- Chain F: H.20
- Ligands: UTP.10, DCP.11
No protein-ligand interaction detected (PLIP)MG.16: 3 residues within 4Å:- Chain H: H.20
- Ligands: UTP.14, DCP.15
No protein-ligand interaction detected (PLIP)MG.20: 3 residues within 4Å:- Chain J: H.20
- Ligands: UTP.18, DCP.19
No protein-ligand interaction detected (PLIP)MG.24: 3 residues within 4Å:- Chain L: H.20
- Ligands: UTP.22, DCP.23
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cockrell, G.M. et al., Metal Ion Involvement in the Allosteric Mechanism of Escherichia coli Aspartate Transcarbamoylase. Biochemistry (2012)
- Release Date
- 2012-10-10
- Peptides
- Aspartate carbamoyltransferase catalytic chain: ACEGIK
Aspartate carbamoyltransferase regulatory chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.09 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
- 6 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cockrell, G.M. et al., Metal Ion Involvement in the Allosteric Mechanism of Escherichia coli Aspartate Transcarbamoylase. Biochemistry (2012)
- Release Date
- 2012-10-10
- Peptides
- Aspartate carbamoyltransferase catalytic chain: ACEGIK
Aspartate carbamoyltransferase regulatory chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D